Anser anser

domestic goose

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: bAnsAns
  name: Anser anser
  taxon_id: 8843
  common_name: domestic goose
  order:
    name: Anseriformes
  family:
    name: Anatidae
  individuals:
    - short_name: bAnsAns1
      biosample_id: SAMEA113398854
      sex: female
  genome_size: 1408320000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) bAnsAns1 62.49 Gbp 44.37x 18.3 GiB
Arima bAnsAns1 82.87 Gbp 58.84x 23.5 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.41 Gbp.
Last upload on 23 February 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bAnsAns1 PacBio HiFi (.bam) 62.49 Gbp 44.37x 18.3 GiB
Arima 82.87 Gbp 58.84x 23.5 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.41 Gbp.
Last upload on 23 February 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_cambridge from 27 February 2024
bAnsAns1.hap1.asm.20240227.fasta.gz (353.1 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 18 6.25 Mbp 1 212.33 Mbp
20 44 4.85 Mbp 2 160.61 Mbp
30 76 3.86 Mbp 3 124.10 Mbp
40 116 3.09 Mbp 4 78.97 Mbp
50 167 2.29 Mbp 7 39.76 Mbp
60 238 1.70 Mbp 11 25.03 Mbp
70 345 1.08 Mbp 18 18.98 Mbp
80 521 0.58 Mbp 29 7.84 Mbp
90 1186 60.84 Kbp 362 82.00 Kbp
100 0 0
0.912x 1744 1.28 Gbp 864 1.28 Gbp
NG based on genome size 1.41 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_cambridge from 27 February 2024
bAnsAns1.hap2.asm.20240227.fasta.gz (336.9 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 17 6.46 Mbp 1 212.70 Mbp
20 44 4.63 Mbp 2 160.33 Mbp
30 79 3.63 Mbp 3 123.55 Mbp
40 122 2.86 Mbp 4 79.41 Mbp
50 180 2.16 Mbp 7 38.22 Mbp
60 256 1.60 Mbp 12 23.30 Mbp
70 366 1.04 Mbp 19 15.75 Mbp
80 573 416.83 Kbp 52 1.49 Mbp
90 0 0
100 0 0
0.861x 1180 1.21 Gbp 444 1.21 Gbp
NG based on genome size 1.41 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 27 February 2024
bAnsAns1.MT.20240227.fasta.gz (5.3 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.