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Raw Data by Technology
Datatype | Individual | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
PacBio HiFi (.fq) | mMusLut2 | 93.49 Gbp | 36.15x | 72.8 GiB | |
Dovetail Genomics | mMusLut3 | 172.89 Gbp | 66.85x | 88.6 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 2.59 Gbp.
Last upload on 12 June 2023.
Coverage based on genome size 2.59 Gbp.
Last upload on 12 June 2023.
Raw Data by Individual
Individual | Datatype | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
mMusLut2 | PacBio HiFi (.fq) | 93.49 Gbp | 36.15x | 72.8 GiB | |
mMusLut3 | Dovetail Genomics | 172.89 Gbp | 66.85x | 88.6 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 2.59 Gbp.
Last upload on 12 June 2023.
Coverage based on genome size 2.59 Gbp.
Last upload on 12 June 2023.
Assemblies
Individual 2 Primary Assembly
Version assembly_curated from 8 June 2023
mMusLut2.pri.cur.20230608.fasta.gz (740.1 MiB)
Quality: not computed
Version assembly_curated from 8 June 2023
mMusLut2.pri.cur.20230608.fasta.gz (740.1 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 2 | 161.66 Mbp | 1 | 290.10 Mbp |
20 | 4 | 146.10 Mbp | 3 | 211.29 Mbp |
30 | 6 | 117.74 Mbp | 4 | 202.57 Mbp |
40 | 8 | 94.97 Mbp | 5 | 177.47 Mbp |
50 | 11 | 83.36 Mbp | 7 | 154.08 Mbp |
60 | 14 | 72.93 Mbp | 8 | 151.51 Mbp |
70 | 18 | 63.47 Mbp | 10 | 133.08 Mbp |
80 | 23 | 42.37 Mbp | 12 | 104.55 Mbp |
90 | 31 | 25.02 Mbp | 15 | 75.87 Mbp |
100 | 64 | 38.84 Kbp | 25 | 38.84 Kbp |
1.000x | 64 | 2.59 Gbp | 25 | 2.59 Gbp |
NG based on genome size 2.59 Gbp.
Individual 2 Alternate Assembly
Version assembly_curated from 8 June 2023
mMusLut2.alt.cur.20230608.fasta.gz (515.3 MiB)
Quality: not computed
Version assembly_curated from 8 June 2023
mMusLut2.alt.cur.20230608.fasta.gz (515.3 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 137 | 0.79 Mbp | 137 | 0.79 Mbp |
20 | 417 | 0.53 Mbp | 417 | 0.53 Mbp |
30 | 811 | 398.20 Kbp | 811 | 398.20 Kbp |
40 | 1321 | 311.74 Kbp | 1321 | 311.74 Kbp |
50 | 1968 | 245.42 Kbp | 1968 | 245.42 Kbp |
60 | 2788 | 193.83 Kbp | 2788 | 193.83 Kbp |
70 | 3841 | 148.62 Kbp | 3841 | 148.62 Kbp |
80 | 5262 | 105.12 Kbp | 5262 | 105.12 Kbp |
90 | 7424 | 64.08 Kbp | 7424 | 64.08 Kbp |
100 | 12043 | 10.04 Kbp | 12043 | 10.04 Kbp |
1.000x | 12043 | 1.79 Gbp | 12043 | 1.79 Gbp |
NG based on genome size 2.59 Gbp.
Individual 2 Mitochondrial Assembly
Version assembly_MT_rockefeller from 21 March 2023
mMusLut2.MT.20230321.fasta.gz (4.9 KiB)
Quality: not computed
Version assembly_MT_rockefeller from 21 March 2023
mMusLut2.MT.20230321.fasta.gz (4.9 KiB)
Quality: not computed
Assembly Metadata
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.