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Raw Data by Technology
Datatype | Individual | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
PacBio HiFi (.fq) | mMicPen1 | 96.59 Gbp | N/A | 80.5 GiB | |
Arima | mMicPen1 | 274.30 Gbp | N/A | 151.2 GiB |
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 17 May 2023.
Coverage based on genome size .
Last upload on 17 May 2023.
Raw Data by Individual
Individual | Datatype | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
mMicPen1 | PacBio HiFi (.fq) | 96.59 Gbp | N/A | 80.5 GiB | |
Arima | 274.30 Gbp | N/A | 151.2 GiB |
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 17 May 2023.
Coverage based on genome size .
Last upload on 17 May 2023.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_curated from 10 July 2023
mMicPen1.hap1.decontam.20230710.fasta.gz (583.0 MiB)
Quality: not computed
Version assembly_curated from 10 July 2023
mMicPen1.hap1.decontam.20230710.fasta.gz (583.0 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 2 | 108.68 Mbp | 1 | 222.66 Mbp |
20 | 4 | 97.27 Mbp | 3 | 145.90 Mbp |
30 | 7 | 71.35 Mbp | 4 | 145.66 Mbp |
40 | 11 | 52.61 Mbp | 6 | 128.93 Mbp |
50 | 15 | 47.18 Mbp | 8 | 113.64 Mbp |
60 | 20 | 40.99 Mbp | 10 | 104.24 Mbp |
70 | 26 | 36.77 Mbp | 12 | 96.37 Mbp |
80 | 33 | 27.94 Mbp | 15 | 73.64 Mbp |
90 | 42 | 17.81 Mbp | 19 | 41.04 Mbp |
100 | 229 | 14.95 Kbp | 187 | 14.95 Kbp |
1.000x | 229 | 2.22 Gbp | 187 | 2.22 Gbp |
NG based on genome size .
Individual 1 Haplotype 2 Assembly
Version assembly_curated from 10 July 2023
mMicPen1.hap2.decontam.20230710.fasta.gz (613.1 MiB)
Quality: not computed
Version assembly_curated from 10 July 2023
mMicPen1.hap2.decontam.20230710.fasta.gz (613.1 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 3 | 104.29 Mbp | 2 | 153.43 Mbp |
20 | 5 | 97.56 Mbp | 3 | 145.95 Mbp |
30 | 8 | 79.77 Mbp | 5 | 144.50 Mbp |
40 | 11 | 68.64 Mbp | 6 | 138.93 Mbp |
50 | 14 | 60.46 Mbp | 8 | 125.72 Mbp |
60 | 19 | 44.21 Mbp | 10 | 114.34 Mbp |
70 | 24 | 37.49 Mbp | 12 | 104.29 Mbp |
80 | 32 | 27.00 Mbp | 15 | 75.43 Mbp |
90 | 43 | 14.22 Mbp | 19 | 43.76 Mbp |
100 | 207 | 11.26 Kbp | 155 | 11.26 Kbp |
1.000x | 207 | 2.31 Gbp | 155 | 2.31 Gbp |
NG based on genome size .
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 10 July 2023
mMicPen1.MT.20230710.fasta.gz (5.2 KiB)
Quality: not computed
Version assembly_MT_rockefeller from 10 July 2023
mMicPen1.MT.20230710.fasta.gz (5.2 KiB)
Quality: not computed
Assembly Metadata
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.