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Raw Data by Technology
Datatype | Individual | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
PacBio HiFi (subreads) | sHepPer1 | 3878.34 Gbp | N/A | 6.6 TiB | |
PacBio HiFi (.fq) | sHepPer1 | 180.96 Gbp | N/A | 133.5 GiB | |
Arima | sHepPer1 | 300.42 Gbp | N/A | 141.8 GiB |
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 16 March 2024.
Coverage based on genome size .
Last upload on 16 March 2024.
Raw Data by Individual
Individual | Datatype | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
sHepPer1 | PacBio HiFi (subreads) | 3878.34 Gbp | N/A | 6.6 TiB | |
PacBio HiFi (.fq) | 180.96 Gbp | N/A | 133.5 GiB | ||
Arima | 300.42 Gbp | N/A | 141.8 GiB |
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 16 March 2024.
Coverage based on genome size .
Last upload on 16 March 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_curated from 7 October 2023
sHepPer1.hap1.cur.20231007.fasta.gz (855.8 MiB)
Quality: not computed
Version assembly_curated from 7 October 2023
sHepPer1.hap1.cur.20231007.fasta.gz (855.8 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 14 | 16.55 Mbp | 2 | 172.36 Mbp |
20 | 38 | 11.93 Mbp | 4 | 141.86 Mbp |
30 | 68 | 9.28 Mbp | 7 | 101.16 Mbp |
40 | 107 | 7.30 Mbp | 11 | 83.46 Mbp |
50 | 162 | 4.91 Mbp | 15 | 66.82 Mbp |
60 | 242 | 3.35 Mbp | 20 | 53.47 Mbp |
70 | 360 | 2.32 Mbp | 27 | 42.91 Mbp |
80 | 548 | 1.26 Mbp | 36 | 28.33 Mbp |
90 | 973 | 460.84 Kbp | 66 | 3.08 Mbp |
100 | 3713 | 6.69 Kbp | 1879 | 6.69 Kbp |
1.000x | 3713 | 3.25 Gbp | 1879 | 3.25 Gbp |
NG based on genome size .
Individual 1 Haplotype 2 Assembly
Version assembly_curated from 7 October 2023
sHepPer1.hap2.decon.20231007.fasta.gz (823.0 MiB)
Quality: not computed
Version assembly_curated from 7 October 2023
sHepPer1.hap2.decon.20231007.fasta.gz (823.0 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 14 | 17.41 Mbp | 2 | 172.44 Mbp |
20 | 33 | 13.55 Mbp | 4 | 138.48 Mbp |
30 | 59 | 10.46 Mbp | 7 | 97.58 Mbp |
40 | 93 | 7.67 Mbp | 10 | 86.89 Mbp |
50 | 140 | 5.56 Mbp | 14 | 66.16 Mbp |
60 | 205 | 3.74 Mbp | 19 | 52.49 Mbp |
70 | 306 | 2.41 Mbp | 25 | 45.03 Mbp |
80 | 470 | 1.42 Mbp | 33 | 32.24 Mbp |
90 | 829 | 0.52 Mbp | 50 | 8.75 Mbp |
100 | 2889 | 9.87 Kbp | 1194 | 9.87 Kbp |
1.000x | 2889 | 3.06 Gbp | 1194 | 3.06 Gbp |
NG based on genome size .
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 7 June 2023
sHepPer1.MT.20230607.fasta.gz (5.7 KiB)
Quality: not computed
Version assembly_MT_rockefeller from 7 June 2023
sHepPer1.MT.20230607.fasta.gz (5.7 KiB)
Quality: not computed
Assembly Metadata
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.