Xenentodon cancila

freshwater garfish

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank fXenCan1: GCA_014839995.1 fXenCan1: GCA_014839645.1
ENA fXenCan1: GCA_014839995.1 fXenCan1: GCA_014839645.1
UCSC Genome Browser fXenCan1: GCA_014839995.1 fXenCan1: GCA_014839645.1

metadata.yaml (view) (edit on github)
species:
  short_name: fXenCan
  name: Xenentodon cancila
  taxon_id: 129108
  common_name: freshwater garfish
  order:
    name: Beloniformes
  family:
    name: Belonidae
  individuals:
    - short_name: fXenCan1
  project: [ vgp ]
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR fXenCan1 63.12 Gbp 85.74x 111.4 GiB
10x fXenCan1 64.25 Gbp 87.28x 29.2 GiB
Bionano fXenCan1 N/A 423.85x 402.2 MiB
Arima fXenCan1 100.15 Gbp 136.03x 61.5 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.74 Gbp.
Last upload on 10 October 2019.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fXenCan1 PacBio CLR 63.12 Gbp 85.74x 111.4 GiB
10x 64.25 Gbp 87.28x 29.2 GiB
Bionano N/A 423.85x 402.2 MiB
Arima 100.15 Gbp 136.03x 61.5 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.74 Gbp.
Last upload on 10 October 2019.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 24 April 2020
fXenCan1.pri.cur.20200424.fasta.gz (209.0 MiB)

Quality: 61.1 errors/Mb (QV=42.14)

Contigs Scaffolds
NG LG Len LG Len
10 7 7.51 Mbp 2 33.84 Mbp
20 19 5.61 Mbp 4 33.16 Mbp
30 33 4.28 Mbp 6 32.45 Mbp
40 54 3.09 Mbp 8 31.16 Mbp
50 82 2.20 Mbp 11 28.68 Mbp
60 123 1.45 Mbp 13 28.28 Mbp
70 188 0.89 Mbp 16 27.89 Mbp
80 309 404.39 Kbp 19 26.42 Mbp
90 595 155.85 Kbp 21 26.01 Mbp
100 1781 19 bp 408 12.32 Kbp
1.000x 1782 0.73 Gbp 409 0.74 Gbp
NG based on genome size 0.74 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 24 April 2020
fXenCan1.alt.cur.20200424.fasta.gz (192.0 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 88 0.59 Mbp 88 0.59 Mbp
20 217 452.50 Kbp 217 452.50 Kbp
30 386 340.36 Kbp 386 340.36 Kbp
40 604 266.36 Kbp 604 266.36 Kbp
50 881 211.43 Kbp 881 211.43 Kbp
60 1233 167.05 Kbp 1233 167.05 Kbp
70 1682 129.12 Kbp 1682 129.12 Kbp
80 2274 95.97 Kbp 2274 95.97 Kbp
90 3138 59.77 Kbp 3137 59.88 Kbp
100 5170 265 bp 5168 265 bp
1.000x 5171 0.66 Gbp 5169 0.66 Gbp
NG based on genome size 0.74 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 3 October 2019
fXenCan1.MT.20191003.fasta.gz (5.0 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.