Thunnus thynnus

Atlantic bluefin tuna

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: fThuThy
  name: Thunnus thynnus
  taxon_id: 8237
  common_name: Atlantic bluefin tuna
  order:
    name: Perciformes
  family:
    name: Scombridae
  individuals:
    - short_name: fThuThy2
      biosample_id: SAMEA111406335
      sex:
    - short_name: fThuThy3
      biosample_id: SAMEA111406336
      sex:
  genome_size: 782400000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) fThuThy2 31.17 Gbp 39.84x 11.7 GiB
Arima fThuThy3 145.83 Gbp 186.39x 43.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.78 Gbp.
Last upload on 15 December 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fThuThy2 PacBio HiFi (.bam) 31.17 Gbp 39.84x 11.7 GiB
fThuThy3 Arima 145.83 Gbp 186.39x 43.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.78 Gbp.
Last upload on 15 December 2023.
Assemblies
Individual 2 Primary Assembly
Version assembly_curated from 26 January 2024
fThuThy2.pri.cur.20240126.fasta.gz (228.7 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 11 6.72 Mbp 2 40.88 Mbp
20 24 5.58 Mbp 4 37.85 Mbp
30 39 4.62 Mbp 7 35.69 Mbp
40 57 3.79 Mbp 9 35.45 Mbp
50 81 2.98 Mbp 11 34.32 Mbp
60 109 2.52 Mbp 13 32.23 Mbp
70 144 2.03 Mbp 16 31.06 Mbp
80 189 1.47 Mbp 18 30.67 Mbp
90 259 0.84 Mbp 21 27.78 Mbp
100 413 227.62 Kbp 24 20.98 Mbp
1.021x 588 0.80 Gbp 120 0.80 Gbp
NG based on genome size 0.78 Gbp.
Individual 2 Alternate Assembly
Version assembly_curated from 26 January 2024
fThuThy2.alt.cur.20240126.fasta.gz (230.1 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 32 2.05 Mbp 32 2.05 Mbp
20 75 1.60 Mbp 75 1.60 Mbp
30 131 1.24 Mbp 131 1.24 Mbp
40 202 1.01 Mbp 202 1.01 Mbp
50 291 0.80 Mbp 291 0.80 Mbp
60 400 0.63 Mbp 400 0.63 Mbp
70 544 467.19 Kbp 544 467.19 Kbp
80 745 325.55 Kbp 745 325.55 Kbp
90 1064 182.56 Kbp 1064 182.56 Kbp
100 2079 28.97 Kbp 2077 29.03 Kbp
1.031x 3715 0.81 Gbp 3713 0.81 Gbp
NG based on genome size 0.78 Gbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.