Thalassophryne amazonica

prehistoric monster fish

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank fThaAma1: GCA_902500255.1 fThaAma1: GCA_902500245.1
ENA fThaAma1: GCA_902500255.1 fThaAma1: GCA_902500245.1
UCSC Genome Browser fThaAma1: GCA_902500255.1 fThaAma1: GCA_902500245.1

metadata.yaml (view) (edit on github)
species:
  short_name: fThaAma
  name: Thalassophryne amazonica
  taxon_id: 390379
  common_name: prehistoric monster fish
  order:
    name: Batrachoidiformes
  family:
    name: Batrachoididae
  individuals:
    - short_name: fThaAma1
      biosample_id: SAMEA104129913
      sex:
  genome_size:
  genome_size_method:
  project: [ vgp ]
Copyright Ralf Britz/NHM, used with permission
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR fThaAma1 134.05 Gbp 54.79x 235.7 GiB
10x fThaAma1 239.24 Gbp 97.79x 161.4 GiB
Bionano fThaAma1 N/A 330.51x 1.2 GiB
Arima fThaAma1 265.57 Gbp 108.55x 165.3 GiB
Dovetail Genomics fThaAma1 285.89 Gbp 116.85x 172.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.45 Gbp.
Last upload on 31 May 2019.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fThaAma1 PacBio CLR 134.05 Gbp 54.79x 235.7 GiB
10x 239.24 Gbp 97.79x 161.4 GiB
Bionano N/A 330.51x 1.2 GiB
Arima 265.57 Gbp 108.55x 165.3 GiB
Dovetail Genomics 285.89 Gbp 116.85x 172.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.45 Gbp.
Last upload on 31 May 2019.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 26 September 2019
fThaAma1.pri.cur.20190926.fasta.gz (702.3 MiB)

Quality: 365.8 errors/Mb (QV=34.37)

Contigs Scaffolds
NG LG Len LG Len
10 28 5.89 Mbp 1 160.46 Mbp
20 76 4.41 Mbp 3 146.42 Mbp
30 138 3.51 Mbp 4 133.90 Mbp
40 215 2.83 Mbp 6 122.56 Mbp
50 310 2.32 Mbp 8 118.42 Mbp
60 434 1.67 Mbp 10 117.38 Mbp
70 607 1.18 Mbp 13 99.27 Mbp
80 864 0.78 Mbp 15 92.12 Mbp
90 1284 401.77 Kbp 18 72.82 Mbp
100 3017 40 bp 463 890 bp
1.000x 3018 2.43 Gbp 464 2.45 Gbp
NG based on genome size 2.45 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 26 September 2019
fThaAma1.alt.cur.20190926.fasta.gz (513.3 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 472 289.79 Kbp 472 290.22 Kbp
20 1186 215.72 Kbp 1185 215.72 Kbp
30 2106 172.80 Kbp 2105 172.80 Kbp
40 3236 142.47 Kbp 3234 142.48 Kbp
50 4594 119.17 Kbp 4593 119.21 Kbp
60 6225 98.75 Kbp 6224 98.76 Kbp
70 8197 81.00 Kbp 8195 81.02 Kbp
80 10646 63.97 Kbp 10643 63.98 Kbp
90 13875 46.24 Kbp 13872 46.25 Kbp
100 19586 193 bp 19578 193 bp
1.000x 19587 1.77 Gbp 19579 1.77 Gbp
NG based on genome size 2.45 Gbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.