Tautogolabrus adspersus

cunner

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank fTauAds1: GCA_020745685.1 fTauAds1: GCA_020745675.1
ENA fTauAds1: GCA_020745685.1 fTauAds1: GCA_020745675.1
UCSC Genome Browser fTauAds1: GCA_020745685.1 fTauAds1: GCA_020745675.1

metadata.yaml (view) (edit on github)
species:
  common_name: cunner
  family:
    name: Labridae
  genome_size: 1000000000
  genome_size_method: null
  individuals:
  - short_name: fTauAds1
  name: Tautogolabrus adspersus
  order:
    name: Perciformes
  short_name: fTauAds
  taxon_id: 34787
  project: [ vgp ]
CC BY 2.0 Derek Keats (flickr)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR fTauAds1 103.91 Gbp 103.91x 186.8 GiB
10x fTauAds1 88.87 Gbp 88.87x 44.6 GiB
Bionano fTauAds1 N/A 744.52x 1.3 GiB
Arima fTauAds1 64.39 Gbp 64.39x 40.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.00 Gbp.
Last upload on 28 May 2021.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fTauAds1 PacBio CLR 103.91 Gbp 103.91x 186.8 GiB
10x 88.87 Gbp 88.87x 44.6 GiB
Bionano N/A 744.52x 1.3 GiB
Arima 64.39 Gbp 64.39x 40.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.00 Gbp.
Last upload on 28 May 2021.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 18 October 2021
fTauAds1.pri.cur.20211018.fasta.gz (207.2 MiB)

Quality: 17.1 errors/Mb (QV=47.67)

Contigs Scaffolds
NG LG Len LG Len
10 4 17.50 Mbp 2 35.76 Mbp
20 11 12.35 Mbp 5 34.03 Mbp
30 20 10.06 Mbp 8 32.54 Mbp
40 32 7.37 Mbp 11 31.65 Mbp
50 48 4.99 Mbp 15 29.54 Mbp
60 74 2.69 Mbp 18 27.11 Mbp
70 149 357.65 Kbp 22 21.30 Mbp
80 0 0
90 0 0
100 0 0
0.719x 346 0.72 Gbp 63 0.72 Gbp
NG based on genome size 1.00 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 18 October 2021
fTauAds1.alt.cur.20211018.fasta.gz (201.0 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 29 2.32 Mbp 29 2.32 Mbp
20 85 1.49 Mbp 85 1.49 Mbp
30 162 1.14 Mbp 162 1.14 Mbp
40 264 0.83 Mbp 264 0.83 Mbp
50 413 0.53 Mbp 413 0.54 Mbp
60 668 269.57 Kbp 667 274.92 Kbp
70 0 0
80 0 0
90 0 0
100 0 0
0.696x 1507 0.70 Gbp 1476 0.70 Gbp
NG based on genome size 1.00 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 28 May 2021
fTauAds1.MT.20210528.fasta.gz (5.0 KiB)

Quality: not computed
Assembly Metadata
fTauAds1_metadata.yml (view)
samples:
- biomaterial_provider: Dalhousie University
  bioproject_accession: PRJNA516733
  birth_date: ''
  birth_location: ''
  breed: ''
  collected_by: Tony Einfeldt
  collection_date: 08/12/2019
  common_name: cunner
  description: ''
  dev_stage: adult
  geo_loc_name: Canada - Alderney Landing, Halifax
  isolate: fTauAds1
  lat_lon: 44.66 N, 63.57 W
  organism: Tautogolabrus adspersus
  sex: male
  specimen_voucher: ''
  store_cond: -80C
  taxon_Id: '34787'
  tissue: Muscle
  treatment: ''
  tube_id: fTauAds1.MS1
- biomaterial_provider: Dalhousie University
  bioproject_accession: PRJNA516733
  birth_date: ''
  birth_location: ''
  breed: ''
  collected_by: Tony Einfeldt
  collection_date: 08/12/2019
  common_name: cunner
  description: ''
  dev_stage: adult
  geo_loc_name: Canada - Alderney Landing, Halifax
  isolate: fTauAds1
  lat_lon: 44.66 N, 63.57 W
  organism: Tautogolabrus adspersus
  sex: male
  specimen_voucher: ''
  store_cond: -80C
  taxon_Id: '34787'
  tissue: Gill
  treatment: ''
  tube_id: fTauAds1.MC1
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.