Tamandua tetradactyla

southern tamandua

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank mTamTet1: GCA_023851605.1 mTamTet1: GCA_023853755.1
ENA mTamTet1: GCA_023851605.1 mTamTet1: GCA_023853755.1
UCSC Genome Browser mTamTet1: GCA_023851605.1 mTamTet1: GCA_023853755.1

metadata.yaml (view) (edit on github)
species:
  name: Tamandua tetradactyla
  individuals:
  - short_name: mTamTet1
  short_name: mTamTet
  taxon_id: 48850
  common_name: southern tamandua
  genome_size: 4020000000
  genome_size_method: GoAT
  order:
    name: Pilosa
  family:
    name: Myrmecophagidae
  project: [ vgp ]
CC BY-SA 3.0 Quartl (Wikimedia)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR mTamTet1 267.93 Gbp 66.65x 472.4 GiB
10x mTamTet1 310.46 Gbp 77.23x 146.9 GiB
Bionano mTamTet1 N/A 478.92x 3.9 GiB
Arima mTamTet1 323.25 Gbp 80.41x 159.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 4.02 Gbp.
Last upload on 30 August 2019.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mTamTet1 PacBio CLR 267.93 Gbp 66.65x 472.4 GiB
10x 310.46 Gbp 77.23x 146.9 GiB
Bionano N/A 478.92x 3.9 GiB
Arima 323.25 Gbp 80.41x 159.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 4.02 Gbp.
Last upload on 30 August 2019.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 3 February 2022
mTamTet1.pri.cur.20220203.fasta.gz (0.9 GiB)

Quality: 11.1 errors/Mb (QV=49.56)

Contigs Scaffolds
NG LG Len LG Len
10 13 23.67 Mbp 1 224.05 Mbp
20 32 18.64 Mbp 3 200.98 Mbp
30 57 14.18 Mbp 5 182.92 Mbp
40 92 9.72 Mbp 8 126.63 Mbp
50 140 7.12 Mbp 11 103.05 Mbp
60 208 4.83 Mbp 15 90.71 Mbp
70 325 2.48 Mbp 20 64.11 Mbp
80 0 0
90 0 0
100 0 0
0.793x 1162 3.19 Gbp 201 3.21 Gbp
NG based on genome size 4.02 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 3 February 2022
mTamTet1.alt.cur.20220203.fasta.gz (846.8 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 201 1.45 Mbp 201 1.45 Mbp
20 547 0.95 Mbp 547 0.95 Mbp
30 1055 0.66 Mbp 1055 0.66 Mbp
40 1769 492.76 Kbp 1769 492.76 Kbp
50 2722 357.69 Kbp 2722 357.69 Kbp
60 4086 239.49 Kbp 4086 239.49 Kbp
70 6507 100.53 Kbp 6506 100.70 Kbp
80 0 0
90 0 0
100 0 0
0.721x 7866 2.90 Gbp 7862 2.90 Gbp
NG based on genome size 4.02 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_curated from 3 February 2022
mTamTet1.pri.cur.20220203.MT.fasta.gz (4.8 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.