Sylvia borin

garden warbler

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank bSylBor1: GCA_014839755.1 bSylBor1: GCA_014839765.1
ENA bSylBor1: GCA_014839755.1 bSylBor1: GCA_014839765.1
UCSC Genome Browser bSylBor1: GCA_014839755.1 bSylBor1: GCA_014839765.1

metadata.yaml (view) (edit on github)
species:
  common_name: garden warbler
  family:
    name: Sylviidae
  genome_size: 1200000000
  genome_size_method: null
  individuals:
  - short_name: bSylBor1
  name: Sylvia borin
  order:
    name: Passeriformes
  short_name: bSylBor
  taxon_id: 1471886
  project: [ vgp ]
CC BY-NC-SA 2.0 Steve Garvie (flickr)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR bSylBor1 86.55 Gbp 72.12x 145.6 GiB
10x bSylBor1 52.90 Gbp 44.08x 27.6 GiB
Bionano bSylBor1 N/A 589.67x 1.2 GiB
Arima bSylBor2 95.65 Gbp 79.71x 57.6 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.20 Gbp.
Last upload on 21 January 2020.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bSylBor1 PacBio CLR 86.55 Gbp 72.12x 145.6 GiB
10x 52.90 Gbp 44.08x 27.6 GiB
Bionano N/A 589.67x 1.2 GiB
bSylBor2 Arima 95.65 Gbp 79.71x 57.6 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.20 Gbp.
Last upload on 21 January 2020.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 24 April 2020
bSylBor1.pri.cur.20200424.fasta.gz (302.7 MiB)

Quality: 27.0 errors/Mb (QV=45.69)

Contigs Scaffolds
NG LG Len LG Len
10 1 61.36 Mbp 0 153.15 Mbp
20 3 56.36 Mbp 1 115.67 Mbp
30 5 52.70 Mbp 2 113.69 Mbp
40 7 51.92 Mbp 4 72.75 Mbp
50 11 28.09 Mbp 5 72.29 Mbp
60 17 17.89 Mbp 8 36.31 Mbp
70 25 11.09 Mbp 12 20.97 Mbp
80 45 3.87 Mbp 20 11.14 Mbp
90 0 0
100 0 0
0.870x 310 1.04 Gbp 176 1.05 Gbp
NG based on genome size 1.20 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 24 April 2020
bSylBor1.alt.cur.20200424.fasta.gz (300.8 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 7 12.55 Mbp 7 12.55 Mbp
20 17 9.60 Mbp 17 9.60 Mbp
30 32 7.10 Mbp 32 7.10 Mbp
40 53 5.09 Mbp 53 5.09 Mbp
50 82 3.36 Mbp 82 3.36 Mbp
60 126 2.20 Mbp 126 2.20 Mbp
70 201 1.20 Mbp 201 1.20 Mbp
80 349 0.54 Mbp 349 0.54 Mbp
90 0 0
100 0 0
0.861x 775 1.03 Gbp 775 1.03 Gbp
NG based on genome size 1.20 Gbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.