Sturnira parvidens

little yellow-shouldered Mesoamerican bat

Included in the VGP and BAT1K.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: mStuPar
  name: Sturnira parvidens
  taxon_id: 196700
  common_name: little yellow-shouldered Mesoamerican bat
  order:
    name: Chiroptera
  family:
    name: Phyllostomidae
  individuals:
  - mStuPar1
  genome_size: 2704170000
  genome_size_method: GoaT
  project: [ vgp , bat1k ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.fq) mStuPar1 18.67 Gbp 6.90x 62.7 GiB
PacBio HiFi (.bam) mStuPar1 95.06 Gbp 35.15x 319.1 GiB
Arima mStuPar1 149.32 Gbp 55.22x 83.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.70 Gbp.
Last upload on 21 November 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mStuPar1 PacBio HiFi (.fq) 18.67 Gbp 6.90x 62.7 GiB
PacBio HiFi (.bam) 95.06 Gbp 35.15x 319.1 GiB
Arima 149.32 Gbp 55.22x 83.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.70 Gbp.
Last upload on 21 November 2023.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_curated from 30 November 2023
mStuPar1.HiC.hap1.decontam.20231130.fasta.gz (565.8 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 3 103.36 Mbp 1 245.87 Mbp
20 5 94.84 Mbp 2 216.38 Mbp
30 7 77.82 Mbp 4 180.14 Mbp
40 11 52.93 Mbp 5 171.62 Mbp
50 15 48.48 Mbp 6 156.56 Mbp
60 21 28.24 Mbp 8 142.75 Mbp
70 30 22.13 Mbp 9 132.44 Mbp
80 42 16.06 Mbp 11 109.06 Mbp
90 61 6.79 Mbp 14 59.52 Mbp
100 1024 2.98 Kbp 947 2.98 Kbp
1.000x 1024 2.20 Gbp 947 2.20 Gbp
NG based on genome size 2.70 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_curated from 30 November 2023
mStuPar1.HiC.hap2.decontam.20231130.fasta.gz (592.8 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 3 105.11 Mbp 1 243.74 Mbp
20 5 96.35 Mbp 2 216.32 Mbp
30 8 78.53 Mbp 4 180.64 Mbp
40 11 63.36 Mbp 5 169.52 Mbp
50 15 50.53 Mbp 6 154.50 Mbp
60 20 34.51 Mbp 8 141.76 Mbp
70 28 24.48 Mbp 10 121.27 Mbp
80 40 15.52 Mbp 12 108.75 Mbp
90 60 6.73 Mbp 14 60.17 Mbp
100 795 2.98 Kbp 724 2.98 Kbp
1.000x 795 2.30 Gbp 724 2.30 Gbp
NG based on genome size 2.70 Gbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.