Stenella coeruleoalba

striped dolphin

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank mSteCoe1: GCA_951394435.1 mSteCoe1: GCA_951394445.1
ENA mSteCoe1: GCA_951394435.1 mSteCoe1: GCA_951394445.1
UCSC Genome Browser mSteCoe1: GCA_951394435.1 mSteCoe1: GCA_951394445.1

metadata.yaml (view) (edit on github)
species:
  short_name: mSteCoe
  name: Stenella coeruleoalba
  taxon_id: 9737
  common_name: striped dolphin
  order:
    name: Cetacea
  family:
    name: Delphinidae
  individuals:
    - short_name: mSteCoe1
      biosample_id: SAMEA111380539
      sex: male
  genome_size: 3080700000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) mSteCoe1 96.84 Gbp 31.43x 327.8 GiB
Arima mSteCoe1 428.13 Gbp 138.97x 127.5 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.08 Gbp.
Last upload on 11 March 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mSteCoe1 PacBio HiFi (.bam) 96.84 Gbp 31.43x 327.8 GiB
Arima 428.13 Gbp 138.97x 127.5 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.08 Gbp.
Last upload on 11 March 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 11 May 2023
mSteCoe1.pri.cur.20230511.fasta.gz (720.2 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 32 7.85 Mbp 2 182.66 Mbp
20 78 5.86 Mbp 4 150.01 Mbp
30 136 4.70 Mbp 6 128.08 Mbp
40 209 3.87 Mbp 9 111.29 Mbp
50 299 3.05 Mbp 12 101.96 Mbp
60 419 2.21 Mbp 15 89.82 Mbp
70 584 1.53 Mbp 18 80.98 Mbp
80 855 0.82 Mbp 41 2.18 Mbp
90 0 0
100 0 0
0.874x 1631 2.69 Gbp 638 2.69 Gbp
NG based on genome size 3.08 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 11 May 2023
mSteCoe1.alt.cur.20230511.fasta.gz (678.7 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 47 5.04 Mbp 47 5.04 Mbp
20 119 3.79 Mbp 119 3.79 Mbp
30 211 2.94 Mbp 211 2.94 Mbp
40 333 2.22 Mbp 333 2.22 Mbp
50 495 1.64 Mbp 495 1.64 Mbp
60 724 1.12 Mbp 724 1.12 Mbp
70 1091 0.61 Mbp 1091 0.61 Mbp
80 2598 39.91 Kbp 2598 39.91 Kbp
90 0 0
100 0 0
0.807x 3464 2.49 Gbp 3464 2.49 Gbp
NG based on genome size 3.08 Gbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.