Sprattus sprattus

European sprat

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: fSprSpr
  name: Sprattus sprattus
  taxon_id: 196075
  common_name: European sprat
  order:
    name: Clupeiformes
  family:
    name: Clupeidae
  individuals:
    - short_name: fSprSpr1
      biosample_id: SAMEA111562173
      sex:
  genome_size: 997560000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) fSprSpr1 36.59 Gbp 36.68x 93.9 GiB
Arima fSprSpr1 96.27 Gbp 96.50x 31.5 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.00 Gbp.
Last upload on 16 August 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fSprSpr1 PacBio HiFi (.bam) 36.59 Gbp 36.68x 93.9 GiB
Arima 96.27 Gbp 96.50x 31.5 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.00 Gbp.
Last upload on 16 August 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 14 September 2023
fSprSpr1.pri.cur.20230914.fasta.gz (231.9 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 21 4.01 Mbp 2 71.38 Mbp
20 52 2.53 Mbp 3 61.73 Mbp
30 101 1.68 Mbp 5 46.36 Mbp
40 169 1.27 Mbp 8 34.51 Mbp
50 262 0.91 Mbp 11 33.54 Mbp
60 394 0.61 Mbp 14 33.18 Mbp
70 599 368.13 Kbp 17 31.84 Mbp
80 1038 128.66 Kbp 20 27.38 Mbp
90 0 0
100 0 0
0.842x 1888 0.84 Gbp 387 0.84 Gbp
NG based on genome size 1.00 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 14 September 2023
fSprSpr1.alt.cur.20230914.fasta.gz (223.6 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 52 1.30 Mbp 52 1.30 Mbp
20 150 0.81 Mbp 149 0.82 Mbp
30 298 0.58 Mbp 296 0.58 Mbp
40 504 408.06 Kbp 503 408.06 Kbp
50 810 269.52 Kbp 809 269.52 Kbp
60 1283 165.00 Kbp 1281 165.22 Kbp
70 2137 81.72 Kbp 2135 81.72 Kbp
80 4627 18.42 Kbp 4625 18.42 Kbp
90 0 0
100 0 0
0.805x 4971 0.80 Gbp 4969 0.80 Gbp
NG based on genome size 1.00 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 17 August 2023
fSprSpr1.MT.20230817.fasta.gz (5.4 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.