Sphaeramia orbicularis

orbiculate cardinalfish

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank fSphaOr1: GCA_902148855.1 fSphaOr1: GCA_902148825.1
ENA fSphaOr1: GCA_902148855.1 fSphaOr1: GCA_902148825.1
UCSC Genome Browser fSphaOr1: GCA_902148855.1 fSphaOr1: GCA_902148825.1

metadata.yaml (view) (edit on github)
species:
  short_name: fSphaOr
  name: Sphaeramia orbicularis
  taxon_id: 375764
  common_name: orbiculate cardinalfish
  order:
    name: Kurtiformes
  family:
    name: Apogonidae
  individuals:
    - short_name: fSphaOr1
      biosample_id: SAMEA4966328
      sex:
  genome_size:
  genome_size_method:
  project: [ vgp ]
CC BY-SA 3.0 Sushi Girl1995 (wikimedia)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR fSphaOr1 70.26 Gbp 52.33x 121.1 GiB
10x fSphaOr1 120.51 Gbp 89.75x 76.6 GiB
Bionano fSphaOr1 N/A 591.95x 1.1 GiB
Arima fSphaOr1 140.47 Gbp 104.62x 85.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.34 Gbp.
Last upload on 19 March 2019.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fSphaOr1 PacBio CLR 70.26 Gbp 52.33x 121.1 GiB
10x 120.51 Gbp 89.75x 76.6 GiB
Bionano N/A 591.95x 1.1 GiB
Arima 140.47 Gbp 104.62x 85.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.34 Gbp.
Last upload on 19 March 2019.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 19 June 2019
fSphaOr1.pri.cur.20190619.fasta.gz (378.0 MiB)

Quality: 327.2 errors/Mb (QV=34.85)

Contigs Scaffolds
NG LG Len LG Len
10 13 7.85 Mbp 1 63.27 Mbp
20 34 5.43 Mbp 3 62.08 Mbp
30 63 4.02 Mbp 6 59.52 Mbp
40 100 3.23 Mbp 8 57.84 Mbp
50 147 2.36 Mbp 10 57.17 Mbp
60 214 1.69 Mbp 13 56.00 Mbp
70 312 1.07 Mbp 15 55.08 Mbp
80 480 0.58 Mbp 18 53.31 Mbp
90 853 227.56 Kbp 20 47.72 Mbp
100 2183 344 bp 339 1.11 Kbp
1.000x 2184 1.34 Gbp 340 1.34 Gbp
NG based on genome size 1.34 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 19 June 2019
fSphaOr1.alt.cur.20190619.fasta.gz (324.0 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 114 0.74 Mbp 114 0.74 Mbp
20 300 0.52 Mbp 299 0.52 Mbp
30 551 403.88 Kbp 548 406.55 Kbp
40 872 309.47 Kbp 865 312.70 Kbp
50 1285 246.06 Kbp 1273 249.01 Kbp
60 1798 198.83 Kbp 1780 202.65 Kbp
70 2443 155.62 Kbp 2413 158.53 Kbp
80 3287 115.83 Kbp 3239 118.11 Kbp
90 4459 78.01 Kbp 4386 79.87 Kbp
100 7037 65 bp 6895 397 bp
1.000x 7038 1.13 Gbp 6896 1.14 Gbp
NG based on genome size 1.34 Gbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.