Sparus aurata

gilthead seabream

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank fSpaAur1: GCA_900880675.2 fSpaAur1: GCA_900880695.1
ENA fSpaAur1: GCA_900880675.2 fSpaAur1: GCA_900880695.1
UCSC Genome Browser fSpaAur1: GCA_900880675.2 fSpaAur1: GCA_900880695.1

metadata.yaml (view) (edit on github)
species:
  short_name: fSpaAur
  name: Sparus aurata
  taxon_id: 8175
  common_name: gilthead seabream
  order:
    name: Spariformes
  family:
    name: Sparidae
  individuals:
    - short_name: fSpaAur1
  genome_size:
  genome_size_method:
  project: [ vgp ]
CC BY 3.0 Roberto Pillon (wikimedia)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR fSpaAur1 47.12 Gbp 56.52x 84.7 GiB
10x fSpaAur1 123.08 Gbp 147.65x 80.3 GiB
Arima fSpaAur1 103.19 Gbp 123.80x 50.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.83 Gbp.
Last upload on 12 April 2018.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fSpaAur1 PacBio CLR 47.12 Gbp 56.52x 84.7 GiB
10x 123.08 Gbp 147.65x 80.3 GiB
Arima 103.19 Gbp 123.80x 50.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.83 Gbp.
Last upload on 12 April 2018.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 14 March 2019
fSpaAur1.pri.cur.20190314.fasta.gz (224.8 MiB)

Quality: 63.5 errors/Mb (QV=41.97)

Contigs Scaffolds
NG LG Len LG Len
10 7 9.55 Mbp 2 40.12 Mbp
20 17 7.24 Mbp 4 37.95 Mbp
30 31 5.24 Mbp 6 37.01 Mbp
40 49 4.03 Mbp 8 36.13 Mbp
50 74 2.86 Mbp 10 35.79 Mbp
60 107 2.13 Mbp 13 35.16 Mbp
70 157 1.31 Mbp 15 31.86 Mbp
80 245 0.71 Mbp 18 30.53 Mbp
90 426 305.76 Kbp 21 28.39 Mbp
100 1224 2 bp 174 20.81 Kbp
1.000x 1225 0.83 Gbp 175 0.83 Gbp
NG based on genome size 0.83 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 14 March 2019
fSpaAur1.alt.cur.20190314.fasta.gz (196.1 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 91 0.51 Mbp 91 0.51 Mbp
20 257 342.37 Kbp 257 342.37 Kbp
30 486 250.78 Kbp 486 250.78 Kbp
40 791 191.94 Kbp 791 191.94 Kbp
50 1183 152.71 Kbp 1183 152.84 Kbp
60 1685 117.07 Kbp 1685 117.07 Kbp
70 2348 87.70 Kbp 2347 87.73 Kbp
80 3239 64.06 Kbp 3238 64.08 Kbp
90 4543 40.95 Kbp 4542 40.95 Kbp
100 7240 125 bp 7238 125 bp
1.000x 7241 0.67 Gbp 7239 0.67 Gbp
NG based on genome size 0.83 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 3 October 2019
fSpaAur1.MT.20191003.fasta.gz (5.0 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.