Sebastes fasciatus

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Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.fq) fSebFas1 40.35 Gbp N/A 18.1 GiB
PacBio HiFi (.bam) fSebFas1 376.49 Gbp N/A 168.4 GiB
Arima fSebFas4 86.16 Gbp N/A 45.6 GiB
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 21 March 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fSebFas1 PacBio HiFi (.fq) 40.35 Gbp N/A 18.1 GiB
PacBio HiFi (.bam) 376.49 Gbp N/A 168.4 GiB
fSebFas4 Arima 86.16 Gbp N/A 45.6 GiB
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 21 March 2024.
Assemblies

No assemblies.

Assembly Metadata
assembly_vgp_standard_2.0/fSebFas1.yml (view)
species: Sebastes fasciatus
specimen: fSebFas1
projects: 
  - vgp
data_location: S3
release_to: S3
primary: s3://genomeark/species/Sebastes_fasciatus/fSebFas1/assembly_vgp_standard_2.0/fSebFas1.standard.pri.20231115.fasta.gz
haplotigs: s3://genomeark/species/Sebastes_fasciatus/fSebFas1/assembly_vgp_standard_2.0/fSebFas1.standard.alt.20231115.fasta.gz
pretext: s3://genomeark/species/Sebastes_fasciatus/fSebFas1/assembly_vgp_standard_2.0/evaluation/pri/pretext/fSebFas1_pri__s2.heatmap.pretext
kmer_spectra_img: s3://genomeark/species/Sebastes_fasciatus/fSebFas1/assembly_vgp_standard_2.0/evaluation/merqury/fSebFas1_png/
pacbio_read_dir: s3://genomeark/species/Sebastes_fasciatus/fSebFas1/genomic_data/pacbio_hifi/
pacbio_read_type: hifi
hic_read_dir: s3://genomeark/species/Sebastes_fasciatus/fSebFas4/genomic_data/arima/
pipeline:
  - hifiasm (0.18.8+galaxy1)
  - yahs (1.2a.2+galaxy1)
assembled_by_group: Rockefeller
notes: This was a primary/alternate assembly of fSebFas1. This individual did not have bionano data. The HiC data came from a different individual, fSebFas4. HiC scaffolding was performed with yahs. The HiC prep was Arima. After purging, merqury plots show some potential false duplications in the alternate assembly. These were not removed even after a second round of purging on the alternate assembly, so the original alternate assembly (i.e., not twice-purged) is uploaded. 
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.