Scophthalmus maximus

turbot

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: fScoMax
  name: Scophthalmus maximus
  taxon_id: 52904
  common_name: turbot
  order:
    name: Pleuronectiformes
  family:
    name: Scophthalmidae
  individuals:
    - short_name: fScoMax1
      biosample_id: SAMEA110450106
      sex:
  genome_size: 841080000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) fScoMax1 20.64 Gbp 24.54x 13.6 GiB
Arima fScoMax1 178.30 Gbp 211.99x 56.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.84 Gbp.
Last upload on 13 November 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fScoMax1 PacBio HiFi (.bam) 20.64 Gbp 24.54x 13.6 GiB
Arima 178.30 Gbp 211.99x 56.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.84 Gbp.
Last upload on 13 November 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 2 December 2023
fScoMax1.pri.cur.20231202.fasta.gz (156.7 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 19 3.33 Mbp 3 31.24 Mbp
20 51 2.23 Mbp 6 26.79 Mbp
30 96 1.64 Mbp 9 26.18 Mbp
40 162 1.06 Mbp 13 25.50 Mbp
50 263 0.63 Mbp 16 22.63 Mbp
60 454 280.11 Kbp 20 20.78 Mbp
70 0 0
80 0 0
90 0 0
100 0 0
0.654x 913 0.55 Gbp 108 0.55 Gbp
NG based on genome size 0.84 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 2 December 2023
fScoMax1.alt.cur.20231202.fasta.gz (154.9 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 54 1.14 Mbp 54 1.14 Mbp
20 147 0.73 Mbp 147 0.73 Mbp
30 292 475.66 Kbp 292 475.66 Kbp
40 515 297.12 Kbp 515 297.12 Kbp
50 878 177.69 Kbp 878 177.69 Kbp
60 1624 64.09 Kbp 1624 64.09 Kbp
70 0 0
80 0 0
90 0 0
100 0 0
0.642x 2723 0.54 Gbp 2723 0.54 Gbp
NG based on genome size 0.84 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 14 November 2023
fScoMax1.MT.20231114.fasta.gz (5.5 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.