Scomber scombrus

Atlantic mackerel

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: fScoSco
  name: Scomber scombrus
  taxon_id: 13677
  common_name: Atlantic mackerel
  order:
    name: Perciformes
  family:
    name: Scombridae
  individuals:
    - short_name: fScoSco1
      biosample_id: SAMEA110450232
      sex:
  genome_size: 948660000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) fScoSco1 20.14 Gbp 21.23x 12.7 GiB
Arima fScoSco1 108.03 Gbp 113.87x 33.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.95 Gbp.
Last upload on 13 November 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fScoSco1 PacBio HiFi (.bam) 20.14 Gbp 21.23x 12.7 GiB
Arima 108.03 Gbp 113.87x 33.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.95 Gbp.
Last upload on 13 November 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 25 November 2023
fScoSco1.pri.cur.20231125.fasta.gz (213.6 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 19 3.81 Mbp 3 35.80 Mbp
20 48 2.87 Mbp 6 33.76 Mbp
30 86 2.13 Mbp 9 33.07 Mbp
40 139 1.50 Mbp 12 31.10 Mbp
50 216 1.00 Mbp 15 29.55 Mbp
60 337 0.61 Mbp 18 28.78 Mbp
70 591 222.72 Kbp 21 25.33 Mbp
80 1765 23.01 Kbp 278 32.86 Kbp
90 0 0
100 0 0
0.805x 2155 0.76 Gbp 666 0.76 Gbp
NG based on genome size 0.95 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 25 November 2023
fScoSco1.alt.cur.20231125.fasta.gz (207.7 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 73 0.96 Mbp 73 0.96 Mbp
20 191 0.68 Mbp 191 0.68 Mbp
30 355 0.50 Mbp 355 0.50 Mbp
40 584 343.83 Kbp 584 344.23 Kbp
50 922 229.31 Kbp 921 230.80 Kbp
60 1474 128.94 Kbp 1471 129.79 Kbp
70 2588 55.16 Kbp 2579 55.37 Kbp
80 0 0
90 0 0
100 0 0
0.771x 4917 0.73 Gbp 4905 0.73 Gbp
NG based on genome size 0.95 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 14 November 2023
fScoSco1.MT.20231114.fasta.gz (5.4 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.