Sardina pilchardus

sardine

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: fSarPil
  name: Sardina pilchardus
  taxon_id: 27697
  common_name: sardine
  order:
    name: Clupeiformes
  family:
    name: Clupeidae
  individuals:
    - short_name: fSarPil1
      biosample_id: SAMEA111562172
      sex:
  genome_size: 997560000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) fSarPil1 35.72 Gbp 35.81x 80.6 GiB
Arima fSarPil1 81.43 Gbp 81.63x 25.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.00 Gbp.
Last upload on 10 October 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fSarPil1 PacBio HiFi (.bam) 35.72 Gbp 35.81x 80.6 GiB
Arima 81.43 Gbp 81.63x 25.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.00 Gbp.
Last upload on 10 October 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 12 December 2023
fSarPil1.pri.cur.20231212.fasta.gz (237.1 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 25 3.26 Mbp 3 40.94 Mbp
20 63 2.28 Mbp 5 37.04 Mbp
30 116 1.61 Mbp 8 35.60 Mbp
40 188 1.20 Mbp 11 34.70 Mbp
50 283 0.91 Mbp 13 34.46 Mbp
60 414 0.64 Mbp 16 33.55 Mbp
70 605 411.80 Kbp 19 32.36 Mbp
80 955 187.51 Kbp 23 30.18 Mbp
90 0 0
100 0 0
0.871x 1895 0.87 Gbp 241 0.87 Gbp
NG based on genome size 1.00 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 12 December 2023
fSarPil1.alt.cur.20231212.fasta.gz (253.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 49 1.53 Mbp 3 39.72 Mbp
20 131 0.98 Mbp 5 36.96 Mbp
30 253 0.71 Mbp 8 34.97 Mbp
40 414 0.54 Mbp 11 33.71 Mbp
50 637 377.78 Kbp 14 32.67 Mbp
60 954 261.07 Kbp 17 32.05 Mbp
70 1437 158.99 Kbp 20 30.95 Mbp
80 2400 66.69 Kbp 23 28.89 Mbp
90 5152 22.51 Kbp 1778 22.98 Kbp
100 0 0
0.937x 7438 0.93 Gbp 4089 0.94 Gbp
NG based on genome size 1.00 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 10 October 2023
fSarPil1.MT.20231010.fasta.gz (5.7 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.