Rutilus rutilus

roach minnow

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank fRutRut2: GCA_951802725.1 fRutRut2: GCA_951802655.1
ENA fRutRut2: GCA_951802725.1 fRutRut2: GCA_951802655.1
UCSC Genome Browser fRutRut2: GCA_951802725.1 fRutRut2: GCA_951802655.1

metadata.yaml (view) (edit on github)
species:
  short_name: fRutRut
  name: Rutilus rutilus
  taxon_id: 48668
  common_name: roach minnow
  order:
    name: Cypriniformes
  family:
    name: Cyprinidae
  individuals:
    - short_name: fRutRut2
      biosample_id: SAMEA11296543
      sex: female
  genome_size: 1085580000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) fRutRut2 41.79 Gbp 38.50x 106.8 GiB
Arima fRutRut2 148.21 Gbp 136.53x 43.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.09 Gbp.
Last upload on 22 April 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fRutRut2 PacBio HiFi (.bam) 41.79 Gbp 38.50x 106.8 GiB
Arima 148.21 Gbp 136.53x 43.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.09 Gbp.
Last upload on 22 April 2023.
Assemblies
Individual 2 Primary Assembly
Version assembly_curated from 16 August 2023
fRutRut2.pri.cur.20230816.fasta.gz (307.6 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 12 8.12 Mbp 2 62.44 Mbp
20 26 6.90 Mbp 4 53.34 Mbp
30 44 5.61 Mbp 6 50.38 Mbp
40 64 4.86 Mbp 8 47.67 Mbp
50 89 3.94 Mbp 10 44.28 Mbp
60 119 3.27 Mbp 13 41.12 Mbp
70 157 2.51 Mbp 16 38.06 Mbp
80 205 1.94 Mbp 19 36.08 Mbp
90 274 1.24 Mbp 22 32.92 Mbp
100 424 291.89 Kbp 25 30.22 Mbp
1.013x 556 1.10 Gbp 85 1.10 Gbp
NG based on genome size 1.09 Gbp.
Individual 2 Alternate Assembly
Version assembly_curated from 16 August 2023
fRutRut2.alt.cur.20230816.fasta.gz (294.2 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 58 1.37 Mbp 57 1.39 Mbp
20 151 0.99 Mbp 149 0.99 Mbp
30 273 0.79 Mbp 271 0.79 Mbp
40 430 0.60 Mbp 428 0.61 Mbp
50 634 471.34 Kbp 632 472.01 Kbp
60 899 356.55 Kbp 896 356.96 Kbp
70 1255 261.13 Kbp 1252 261.44 Kbp
80 1771 165.71 Kbp 1767 166.27 Kbp
90 2773 67.52 Kbp 2767 67.53 Kbp
100 0 0
0.961x 4612 1.04 Gbp 4606 1.04 Gbp
NG based on genome size 1.09 Gbp.
Individual 2 Mitochondrial Assembly
Version assembly_MT_cambridge from 3 May 2023
fRutRut2.MT.20230503.fasta.gz (5.3 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.