Rhynchonycteris naso

proboscis bat

Included in the VGP and BAT1K.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: mRhyNas
  name: Rhynchonycteris naso
  taxon_id: 249017
  common_name: proboscis bat
  order:
    name: Chiroptera
  family:
    name: Emballonuridae
  individuals:
  - mRhyNas2
  genome_size: 3090480000
  genome_size_method: GoaT
  project: [ vgp , bat1k ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.fq) mRhyNas2 132.66 Gbp 42.92x 98.6 GiB
Arima mRhyNas2 220.81 Gbp 71.45x 121.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.09 Gbp.
Last upload on 15 February 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mRhyNas2 PacBio HiFi (.fq) 132.66 Gbp 42.92x 98.6 GiB
Arima 220.81 Gbp 71.45x 121.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.09 Gbp.
Last upload on 15 February 2024.
Assemblies
Individual 2 Haplotype 1 Assembly
Version assembly_curated from 29 August 2023
mRhyNas2.hap1.cur.20230829.fasta.gz (707.8 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 171.23 Mbp 1 372.38 Mbp
20 3 146.80 Mbp 2 317.76 Mbp
30 5 134.66 Mbp 3 310.93 Mbp
40 7 111.20 Mbp 3 310.93 Mbp
50 10 86.27 Mbp 4 286.99 Mbp
60 13 78.41 Mbp 5 261.06 Mbp
70 16 65.85 Mbp 6 209.12 Mbp
80 20 54.57 Mbp 8 151.67 Mbp
90 25 34.67 Mbp 9 142.67 Mbp
100 108 3.41 Kbp 40 18.95 Kbp
1.000x 108 2.46 Gbp 40 2.46 Gbp
NG based on genome size 3.09 Gbp.
Individual 2 Haplotype 2 Assembly
Version assembly_curated from 29 August 2023
mRhyNas2.hap2.cur.20230829.fasta.gz (614.3 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 172.97 Mbp 1 373.09 Mbp
20 3 160.05 Mbp 2 317.68 Mbp
30 5 134.90 Mbp 2 317.68 Mbp
40 7 119.46 Mbp 3 310.88 Mbp
50 9 108.30 Mbp 4 288.04 Mbp
60 11 103.58 Mbp 5 262.10 Mbp
70 13 90.61 Mbp 6 207.71 Mbp
80 16 65.32 Mbp 7 169.51 Mbp
90 20 46.91 Mbp 8 151.60 Mbp
100 77 16.40 Kbp 38 16.40 Kbp
1.000x 77 2.30 Gbp 38 2.30 Gbp
NG based on genome size 3.09 Gbp.
Individual 2 Mitochondrial Assembly
Version assembly_MT_rockefeller from 13 September 2023
mRhyNas2.MT.20230913.fasta.gz (5.3 KiB)

Quality: not computed
Assembly Metadata
assembly_vgp_HiC_2.0/mRhyNas2_hap1.yml (view)
species: Rhynchonycteris naso
specimen: mRhyNas2
projects: 
  - vgp
assembled_by_group: Rockefeller
data_location: S3
release_to: S3
haplotype_to_curate: hap1
hap1: s3://genomeark/species/Rhynchonycteris_naso/mRhyNas2/assembly_vgp_HiC_2.0/mRhyNas2.HiC.hap1.20230829.fasta.gz
hap2: s3://genomeark/species/Rhynchonycteris_naso/mRhyNas2/assembly_vgp_HiC_2.0/mRhyNas2.HiC.hap2.20230829.fasta.gz
pretext_hap1: s3://genomeark/species/Rhynchonycteris_naso/mRhyNas2/assembly_vgp_HiC_2.0/evaluation/hap1/pretext/mRhyNas2_hap1_s2.pretext
pretext_hap2: s3://genomeark/species/Rhynchonycteris_naso/mRhyNas2/assembly_vgp_HiC_2.0/evaluation/hap2/pretext/mRhyNas2_hap2_s2.pretext
kmer_spectra_img: s3://genomeark/species/Rhynchonycteris_naso/mRhyNas2/assembly_vgp_HiC_2.0/evaluation/merqury/mRhyNas2_png/
pacbio_read_dir: s3://genomeark/species/Rhynchonycteris_naso/mRhyNas2/genomic_data/pacbio_hifi/
pacbio_read_type: hifi
hic_read_dir: s3://genomeark/species/Rhynchonycteris_naso/mRhyNas2/genomic_data/arima/
mito: s3://genomeark/species/Rhynchonycteris_naso/mRhyNas2/assembly_MT_rockefeller/mRhyNas2.MT.20230913.fasta.gz
pipeline: 
  - hifiasm (0.19.3+galaxy0)
  - yahs (1.2a.2+galaxy1)
notes: This was a Hifiasm-HiC assembly of mRhyNas2, resulting in two complete haplotypes. HiC scaffolding was performed with YaHS.  The HiC prep kit used was TruSeq. 
assembly_vgp_HiC_2.0/mRhyNas2_hap2.yml (view)
species: Rhynchonycteris naso
specimen: mRhyNas2
projects: 
  - vgp
assembled_by_group: Rockefeller
data_location: S3
release_to: S3
haplotype_to_curate: hap2
hap1: s3://genomeark/species/Rhynchonycteris_naso/mRhyNas2/assembly_vgp_HiC_2.0/mRhyNas2.HiC.hap1.20230829.fasta.gz
hap2: s3://genomeark/species/Rhynchonycteris_naso/mRhyNas2/assembly_vgp_HiC_2.0/mRhyNas2.HiC.hap2.20230829.fasta.gz
pretext_hap1: s3://genomeark/species/Rhynchonycteris_naso/mRhyNas2/assembly_vgp_HiC_2.0/evaluation/hap1/pretext/mRhyNas2_hap1_s2.pretext
pretext_hap2: s3://genomeark/species/Rhynchonycteris_naso/mRhyNas2/assembly_vgp_HiC_2.0/evaluation/hap2/pretext/mRhyNas2_hap2_s2.pretext
kmer_spectra_img: s3://genomeark/species/Rhynchonycteris_naso/mRhyNas2/assembly_vgp_HiC_2.0/evaluation/merqury/mRhyNas2_png/
pacbio_read_dir: s3://genomeark/species/Rhynchonycteris_naso/mRhyNas2/genomic_data/pacbio_hifi/
pacbio_read_type: hifi
hic_read_dir: s3://genomeark/species/Rhynchonycteris_naso/mRhyNas2/genomic_data/arima/
mito: s3://genomeark/species/Rhynchonycteris_naso/mRhyNas2/assembly_MT_rockefeller/mRhyNas2.MT.20230913.fasta.gz
pipeline: 
  - hifiasm (0.19.3+galaxy0)
  - yahs (1.2a.2+galaxy1)
notes: This was a Hifiasm-HiC assembly of mRhyNas2, resulting in two complete haplotypes. HiC scaffolding was performed with YaHS.  The HiC prep kit used was TruSeq. 
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.