Ranitomeya imitator

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.fq) aRanImi1 310.77 Gbp 52.17x 216.4 GiB
Dovetail Genomics aRanImi1 284.56 Gbp 47.77x 148.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 5.96 Gbp.
Last upload on 22 May 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
aRanImi1 PacBio HiFi (.fq) 310.77 Gbp 52.17x 216.4 GiB
Dovetail Genomics 284.56 Gbp 47.77x 148.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 5.96 Gbp.
Last upload on 22 May 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 8 September 2023
aRanImi1.pri.cur.20230908.fasta.gz (1.5 GiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 13 38.88 Mbp 1 1.25 Gbp
20 31 28.26 Mbp 1 1.25 Gbp
30 55 21.82 Mbp 2 0.85 Gbp
40 86 17.50 Mbp 3 0.85 Gbp
50 124 13.91 Mbp 4 0.73 Gbp
60 173 10.56 Mbp 4 0.73 Gbp
70 238 7.80 Mbp 5 0.72 Gbp
80 329 5.51 Mbp 6 0.58 Gbp
90 476 2.77 Mbp 8 206.08 Mbp
100 2437 19 bp 1672 3.40 Kbp
1.000x 2437 5.96 Gbp 1672 5.96 Gbp
NG based on genome size 5.96 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 22 July 2023
aRanImi1.alt.cur.20230722.fasta.gz (758.1 KiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 1 2.97 Mbp 1 2.97 Mbp
20 1 2.97 Mbp 1 2.97 Mbp
30 1 2.97 Mbp 1 2.97 Mbp
40 1 2.97 Mbp 1 2.97 Mbp
50 1 2.97 Mbp 1 2.97 Mbp
60 1 2.97 Mbp 1 2.97 Mbp
70 2 1.30 Mbp 2 1.30 Mbp
80 2 1.30 Mbp 2 1.30 Mbp
90 2 1.30 Mbp 2 1.30 Mbp
100 2 1.30 Mbp 2 1.30 Mbp
1.000x 2 4.26 Mbp 2 4.26 Mbp
NG based on genome size 5.96 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 15 June 2023
aRanImi1.MT.20230615.fasta.gz (5.8 KiB)

Quality: not computed
Assembly Metadata
assembly_stanford_dovetail/aRanImi1.yml (view)
species: Ranitomeya imitator
specimen: aRanImi1
projects: 
  - vgp
data_location: S3
release_to: S3
primary: s3://genomeark/species/Ranitomeya_imitator/aRanImi1/assembly_stanford_dovetail/aRanImi1.stanford.pri.fasta.gz
pretext: s3://genomeark/species/Ranitomeya_imitator/aRanImi1/assembly_stanford_dovetail/evaluation/aRanImi1_pri.pretext
mito: s3://genomeark/species/Ranitomeya_imitator/aRanImi1/assembly_MT_rockefeller/aRanImi1.MT.20230615.fasta.gz
pacbio_read_dir: s3://genomeark/species/Ranitomeya_imitator/aRanImi1/genomic_data/pacbio_hifi/
pacbio_read_type: hifi
hic_read_dir: s3://genomeark/species/Ranitomeya_imitator/aRanImi1/genomic_data/dovetail/
pipeline:
  - hifiasm
  - hirise
assembled_by_group: Stanford
notes: This was a primary assemblhy of aRanImi1 produced at Stanford University, assembled by Dovetail using their assembly service. This is a Phase 1 sample that we are submitting for a curation.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.