Raja brachyura

blonde ray

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: sRajBra
  name: Raja brachyura
  taxon_id: 223862
  common_name: blonde ray
  order:
    name: Rajiformes
  family:
    name: Rajidae
  individuals:
    - short_name: sRajBra1
      biosample_id: SAMEA110450105
      sex: female
  genome_size: 3423000000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) sRajBra1 69.86 Gbp 20.41x 247.6 GiB
Arima sRajBra1 631.03 Gbp 184.35x 197.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.42 Gbp.
Last upload on 22 April 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
sRajBra1 PacBio HiFi (.bam) 69.86 Gbp 20.41x 247.6 GiB
Arima 631.03 Gbp 184.35x 197.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.42 Gbp.
Last upload on 22 April 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 26 September 2023
sRajBra1.pri.cur.20230926.fasta.gz (760.1 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 47 5.70 Mbp 2 156.67 Mbp
20 124 3.74 Mbp 5 122.43 Mbp
30 232 2.77 Mbp 9 82.82 Mbp
40 377 2.03 Mbp 13 68.37 Mbp
50 581 1.37 Mbp 19 49.69 Mbp
60 884 0.91 Mbp 27 40.02 Mbp
70 1428 424.85 Kbp 37 26.66 Mbp
80 0 0
90 0 0
100 0 0
0.789x 3916 2.70 Gbp 1647 2.70 Gbp
NG based on genome size 3.42 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 26 September 2023
sRajBra1.alt.cur.20230926.fasta.gz (738.0 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 184 1.35 Mbp 184 1.35 Mbp
20 496 0.91 Mbp 496 0.91 Mbp
30 938 0.67 Mbp 938 0.67 Mbp
40 1536 495.98 Kbp 1536 495.98 Kbp
50 2360 345.89 Kbp 2360 345.89 Kbp
60 3588 221.07 Kbp 3588 221.07 Kbp
70 5929 90.92 Kbp 5929 90.92 Kbp
80 0 0
90 0 0
100 0 0
0.759x 10683 2.60 Gbp 10683 2.60 Gbp
NG based on genome size 3.42 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 24 April 2023
sRajBra1.MT.20230424.fasta.gz (5.4 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.