Pygocentrus nattereri

red-bellied piranha

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank fPygNat1: GCA_015220715.1 fPygNat1: GCA_015220065.1
ENA fPygNat1: GCA_015220715.1 fPygNat1: GCA_015220065.1
UCSC Genome Browser fPygNat1: GCA_015220715.1 fPygNat1: GCA_015220065.1

metadata.yaml (view) (edit on github)
species:
  common_name: red-bellied piranha
  family:
    name: Serrasalmidae
  genome_size: 1200000000
  genome_size_method: null
  individuals:
  - short_name: fPygNat1
  name: Pygocentrus nattereri
  order:
    name: Characiformes
  short_name: fPygNat
  taxon_id: 42514
  project: [ vgp ]
CC BY-SA 3.0 Grook da Oger (Wikimedia)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR fPygNat1 93.24 Gbp 77.70x 160.1 GiB
10x fPygNat1 87.78 Gbp 73.15x 41.0 GiB
Bionano fPygNat1 N/A 700.00x 1.1 GiB
Arima fPygNat1 92.17 Gbp 76.81x 55.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.20 Gbp.
Last upload on 10 October 2019.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fPygNat1 PacBio CLR 93.24 Gbp 77.70x 160.1 GiB
10x 87.78 Gbp 73.15x 41.0 GiB
Bionano N/A 700.00x 1.1 GiB
Arima 92.17 Gbp 76.81x 55.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.20 Gbp.
Last upload on 10 October 2019.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 13 March 2020
fPygNat1.pri.cur.20200313.fasta.gz (343.2 MiB)

Quality: 12.8 errors/Mb (QV=48.94)

Contigs Scaffolds
NG LG Len LG Len
10 3 30.23 Mbp 2 51.77 Mbp
20 8 22.97 Mbp 4 51.32 Mbp
30 13 20.19 Mbp 6 47.61 Mbp
40 20 16.90 Mbp 9 44.86 Mbp
50 27 13.18 Mbp 12 42.28 Mbp
60 38 10.39 Mbp 15 41.50 Mbp
70 52 7.57 Mbp 18 39.90 Mbp
80 70 5.67 Mbp 21 34.86 Mbp
90 98 3.14 Mbp 24 34.22 Mbp
100 216 254.02 Kbp 28 21.58 Mbp
1.010x 358 1.21 Gbp 55 1.22 Gbp
NG based on genome size 1.20 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 13 March 2020
fPygNat1.alt.cur.20200313.fasta.gz (83.6 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 209 363.97 Kbp 209 363.97 Kbp
20 849 102.34 Kbp 849 102.34 Kbp
30 0 0
40 0 0
50 0 0
60 0 0
70 0 0
80 0 0
90 0 0
100 0 0
0.241x 1751 289.31 Mbp 1751 289.31 Mbp
NG based on genome size 1.20 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 7 October 2019
fPygNat1.MT.20191007.fasta.gz (5.0 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.