Pterocles gutturalis

yellow-throated sandgrouse

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank bPteGut1: GCA_009769525.1 bPteGut1: GCA_009769505.1
ENA bPteGut1: GCA_009769525.1 bPteGut1: GCA_009769505.1
UCSC Genome Browser bPteGut1: GCA_009769525.1 bPteGut1: GCA_009769505.1

metadata.yaml (view) (edit on github)
species:
  common_name: yellow-throated sandgrouse
  family:
    name: Pteroclidae
  genome_size: 1070000000
  genome_size_method: null
  individuals:
  - short_name: bPteGut1
  name: Pterocles gutturalis
  order:
    name: Pterocliformes
  short_name: bPteGut
  taxon_id: 240206
  project: [ vgp ]
CC BY-SA 3.0 Yathin S Krishnappa (wikimedia)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR bPteGut1 75.96 Gbp 70.99x 130.7 GiB
10x bPteGut1 82.79 Gbp 77.38x 42.6 GiB
Bionano bPteGut1 N/A 167.74x 286.3 MiB
Arima bPteGut1 99.04 Gbp 92.56x 52.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.07 Gbp.
Last upload on 15 August 2019.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bPteGut1 PacBio CLR 75.96 Gbp 70.99x 130.7 GiB
10x 82.79 Gbp 77.38x 42.6 GiB
Bionano N/A 167.74x 286.3 MiB
Arima 99.04 Gbp 92.56x 52.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.07 Gbp.
Last upload on 15 August 2019.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 16 October 2019
bPteGut1.pri.cur.20191016.fasta.gz (328.9 MiB)

Quality: 413.6 errors/Mb (QV=33.83)

Contigs Scaffolds
NG LG Len LG Len
10 5 16.45 Mbp 0 132.92 Mbp
20 12 15.57 Mbp 1 126.34 Mbp
30 19 15.11 Mbp 2 83.78 Mbp
40 26 14.43 Mbp 4 56.69 Mbp
50 34 12.22 Mbp 6 47.17 Mbp
60 44 9.69 Mbp 8 43.24 Mbp
70 56 7.67 Mbp 11 34.03 Mbp
80 72 5.66 Mbp 15 23.71 Mbp
90 96 3.50 Mbp 20 18.96 Mbp
100 146 1.22 Mbp 26 12.13 Mbp
1.050x 330 1.12 Gbp 88 1.13 Gbp
NG based on genome size 1.07 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 16 October 2019
bPteGut1.alt.cur.20191016.fasta.gz (308.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 24 3.31 Mbp 24 3.31 Mbp
20 63 2.38 Mbp 63 2.38 Mbp
30 113 1.91 Mbp 113 1.91 Mbp
40 176 1.50 Mbp 176 1.50 Mbp
50 261 1.09 Mbp 261 1.09 Mbp
60 374 0.83 Mbp 374 0.83 Mbp
70 523 0.62 Mbp 523 0.62 Mbp
80 731 418.04 Kbp 731 418.04 Kbp
90 1087 203.60 Kbp 1087 203.60 Kbp
100 0 0
0.970x 1958 1.04 Gbp 1958 1.04 Gbp
NG based on genome size 1.07 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 21 August 2019
bPteGut1.MT.20190821.fasta.gz (5.7 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.