Pristis pectinata

smalltooth sawfish

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank sPriPec2: GCA_009764475.2 sPriPec2: GCA_009764485.1
ENA sPriPec2: GCA_009764475.2 sPriPec2: GCA_009764485.1
UCSC Genome Browser sPriPec2: GCA_009764475.2 sPriPec2: GCA_009764485.1

metadata.yaml (view) (edit on github)
species:
  common_name: smalltooth sawfish
  family:
    name: Pristidae
  genome_size: 2800000000
  genome_size_method: null
  individuals:
  - short_name: sPriPec1
  - short_name: sPriPec2
  name: Pristis pectinata
  order:
    name: Pristiformes
  short_name: sPriPec
  taxon_id: 685728
  project: [ vgp ]
CC BY-NC-ND 2.0 myfwc (flickr)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR sPriPec2 173.45 Gbp 61.95x 296.8 GiB
10x sPriPec2 183.73 Gbp 65.62x 94.0 GiB
Bionano sPriPec2 N/A 233.88x 1.1 GiB
Arima sPriPec2 209.01 Gbp 74.65x 109.8 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.80 Gbp.
Last upload on 21 August 2019.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
sPriPec2 PacBio CLR 173.45 Gbp 61.95x 296.8 GiB
10x 183.73 Gbp 65.62x 94.0 GiB
Bionano N/A 233.88x 1.1 GiB
Arima 209.01 Gbp 74.65x 109.8 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.80 Gbp.
Last upload on 21 August 2019.
Assemblies
Individual 2 Primary Assembly
Version assembly_curated from 15 December 2020
sPriPec2.pri.cur.20201215.fasta.gz (658.8 MiB)

Quality: 165.5 errors/Mb (QV=37.81)

Contigs Scaffolds
NG LG Len LG Len
10 5 38.51 Mbp 1 145.56 Mbp
20 13 32.68 Mbp 3 120.47 Mbp
30 23 22.28 Mbp 6 104.35 Mbp
40 38 17.01 Mbp 9 101.70 Mbp
50 58 11.07 Mbp 12 53.95 Mbp
60 87 8.14 Mbp 18 44.17 Mbp
70 143 3.00 Mbp 26 31.93 Mbp
80 640 68.70 Kbp 40 5.27 Mbp
90 0 0
100 0 0
0.803x 870 2.25 Gbp 172 2.27 Gbp
NG based on genome size 2.80 Gbp.
Individual 2 Alternate Assembly
Version assembly_curated from 15 December 2020
sPriPec2.alt.cur.20201215.fasta.gz (496.7 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 373 0.56 Mbp 373 0.56 Mbp
20 992 375.98 Kbp 992 375.98 Kbp
30 1885 263.33 Kbp 1885 263.33 Kbp
40 3186 176.20 Kbp 3186 176.20 Kbp
50 5297 98.93 Kbp 5297 98.93 Kbp
60 10191 27.57 Kbp 10191 27.57 Kbp
70 0 0
80 0 0
90 0 0
100 0 0
0.605x 10892 1.69 Gbp 10892 1.69 Gbp
NG based on genome size 2.80 Gbp.
Individual 2 Mitochondrial Assembly
Version assembly_MT_rockefeller from 21 August 2019
sPriPec2.MT.20190821.fasta.gz (5.0 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.