Pollachius pollachius

pollack

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank fPolPol2: GCA_949987615.1 fPolPol2: GCA_949987605.1
ENA fPolPol2: GCA_949987615.1 fPolPol2: GCA_949987605.1
UCSC Genome Browser fPolPol2: GCA_949987615.1 fPolPol2: GCA_949987605.1

metadata.yaml (view) (edit on github)
species:
  short_name: fPolPol
  name: Pollachius pollachius
  taxon_id: 185739
  common_name: pollack
  order:
    name: Gadiformes
  family:
    name: Gadidae
  individuals:
    - short_name: fPolPol2
      biosample_id: SAMEA111562038
      sex:
  genome_size: 860640000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) fPolPol2 41.53 Gbp 48.26x 148.4 GiB
Arima fPolPol2 113.33 Gbp 131.68x 35.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.86 Gbp.
Last upload on 11 March 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fPolPol2 PacBio HiFi (.bam) 41.53 Gbp 48.26x 148.4 GiB
Arima 113.33 Gbp 131.68x 35.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.86 Gbp.
Last upload on 11 March 2023.
Assemblies
Individual 2 Primary Assembly
Version assembly_curated from 21 April 2023
fPolPol2.pri.cur.20230421.fasta.gz (166.1 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 34 1.84 Mbp 2 53.00 Mbp
20 93 1.19 Mbp 4 35.14 Mbp
30 187 0.73 Mbp 7 27.71 Mbp
40 330 489.78 Kbp 10 24.68 Mbp
50 551 313.38 Kbp 14 23.37 Mbp
60 923 166.67 Kbp 17 22.53 Mbp
70 2138 21.15 Kbp 314 24.44 Kbp
80 0 0
90 0 0
100 0 0
0.705x 2426 0.61 Gbp 616 0.61 Gbp
NG based on genome size 0.86 Gbp.
Individual 2 Alternate Assembly
Version assembly_curated from 21 April 2023
fPolPol2.alt.cur.20230421.fasta.gz (162.5 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 93 0.67 Mbp 93 0.67 Mbp
20 256 426.65 Kbp 256 426.65 Kbp
30 504 291.02 Kbp 504 291.02 Kbp
40 860 197.87 Kbp 860 197.87 Kbp
50 1408 124.14 Kbp 1408 124.14 Kbp
60 2412 56.27 Kbp 2412 56.27 Kbp
70 0 0
80 0 0
90 0 0
100 0 0
0.688x 4970 0.59 Gbp 4970 0.59 Gbp
NG based on genome size 0.86 Gbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.