Podargus strigoides

tawny frogmouth

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank bPodStr1: GCA_028020825.1 bPodStr1: GCA_028020675.1
ENA bPodStr1: GCA_028020825.1 bPodStr1: GCA_028020675.1
UCSC Genome Browser bPodStr1: GCA_028020825.1 bPodStr1: GCA_028020675.1

metadata.yaml (view) (edit on github)
species:
  name: Podargus strigoides
  individuals:
  - short_name: bPodStr1
  short_name: bPodStr
  taxon_id: 8905
  common_name: tawny frogmouth
  genome_size: 1367000000
  genome_size_method: GoAT
  order:
    name: Caprimulgiformes
  family:
    name: Podargidae
  project: [ vgp ]
CC BY-SA 3.0 JJ Harrison (Wikimedia)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (subreads) bPodStr1 203.14 Gbp 148.60x 435.7 GiB
PacBio HiFi (.fq) bPodStr1 37.87 Gbp 27.70x 28.2 GiB
PacBio HiFi (.bam) bPodStr1 37.80 Gbp 27.65x 128.7 GiB
Bionano bPodStr1 N/A 442.86x 1.1 GiB
Arima bPodStr1 79.83 Gbp 58.40x 41.5 GiB
Illumina bPodStr1 65.07 Gbp 47.60x 31.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.37 Gbp.
Last upload on 15 January 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bPodStr1 PacBio HiFi (subreads) 203.14 Gbp 148.60x 435.7 GiB
PacBio HiFi (.fq) 37.87 Gbp 27.70x 28.2 GiB
PacBio HiFi (.bam) 37.80 Gbp 27.65x 128.7 GiB
Bionano N/A 442.86x 1.1 GiB
Arima 79.83 Gbp 58.40x 41.5 GiB
Illumina 65.07 Gbp 47.60x 31.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.37 Gbp.
Last upload on 15 January 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 18 March 2022
bPodStr1.pri.cur.20220318.fasta.gz (347.9 MiB)

Quality: 0.5 errors/Mb (QV=62.86)

Contigs Scaffolds
NG LG Len LG Len
10 1 65.65 Mbp 0 177.50 Mbp
20 6 24.16 Mbp 1 120.48 Mbp
30 11 22.26 Mbp 3 81.44 Mbp
40 20 14.56 Mbp 4 78.11 Mbp
50 31 9.24 Mbp 7 46.38 Mbp
60 48 7.10 Mbp 10 34.04 Mbp
70 72 4.44 Mbp 16 18.75 Mbp
80 113 2.14 Mbp 24 11.11 Mbp
90 529 97.29 Kbp 322 105.00 Kbp
100 0 0
0.928x 1241 1.27 Gbp 1038 1.27 Gbp
NG based on genome size 1.37 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 18 March 2022
bPodStr1.alt.cur.20220318.fasta.gz (280.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 8 11.84 Mbp 8 11.84 Mbp
20 22 7.20 Mbp 22 7.20 Mbp
30 43 5.49 Mbp 43 5.49 Mbp
40 74 3.61 Mbp 74 3.61 Mbp
50 118 2.66 Mbp 118 2.68 Mbp
60 188 1.40 Mbp 187 1.42 Mbp
70 439 111.90 Kbp 438 111.90 Kbp
80 0 0
90 0 0
100 0 0
0.715x 912 0.98 Gbp 911 0.98 Gbp
NG based on genome size 1.37 Gbp.
Assembly Metadata
assembly_vgp_standard_2.0/bPodStr1.yaml (view)
species: Podargus strigoides
specimen: bPodStr1
projects:
  - vgp
primary: s3://genomeark/species/Podargus_strigoides/bPodStr1/assembly_vgp_standard_2.0/bPodStr1.pri.asm.20220217.fasta.gz
haplotigs: s3://genomeark/species/Podargus_strigoides/bPodStr1/assembly_vgp_standard_2.0/bPodStr1.alt.asm.20220217.fasta.gz
hic_bam: s3://genomeark/species/Podargus_strigoides/bPodStr1/assembly_vgp_standard_2.0/evaluation/pretext/s2/bPodStr1_s2.bam
pretext: s3://genomeark/species/Podargus_strigoides/bPodStr1/assembly_vgp_standard_2.0/evaluation/pretext/s2/bPodStr1_heatmap.pretext
kmer_spectra_img: s3://genomeark/species/Podargus_strigoides/bPodStr1/assembly_vgp_standard_2.0/evaluation/merqury/p/bPodStr1_png/
pipeline:
  - hifiasm (0.16.1+galaxy2)
  - purge_dups (1.2.5+galaxy4)
  - solve (3.7.0+galaxy0)
  - salsa (2.3+galaxy2)
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.