Podarcis cretensis

cretan wall lizard

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank rPodCre2: GCA_951804945.1 rPodCre2: GCA_951804955.1
ENA rPodCre2: GCA_951804945.1 rPodCre2: GCA_951804955.1
UCSC Genome Browser rPodCre2: GCA_951804945.1 rPodCre2: GCA_951804955.1

metadata.yaml (view) (edit on github)
species:
  short_name: rPodCre
  name: Podarcis cretensis
  taxon_id: 1330250
  common_name: cretan wall lizard
  order:
    name: Squamata
  family:
    name: Lacertidae
  individuals:
    - short_name: rPodCre1
      biosample_id: SAMEA12110018
      sex: male
    - short_name: rPodCre2
      biosample_id: SAMEA12110019
      sex: male
  genome_size: 1932772500
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) rPodCre2 43.47 Gbp 22.49x 27.6 GiB
Arima rPodCre1 419.49 Gbp 217.04x 126.1 GiB
rPodCre2 206.73 Gbp 106.96x 62.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.93 Gbp.
Last upload on 22 April 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
rPodCre1 Arima 419.49 Gbp 217.04x 126.1 GiB
rPodCre2 PacBio HiFi (.bam) 43.47 Gbp 22.49x 27.6 GiB
Arima 206.73 Gbp 106.96x 62.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.93 Gbp.
Last upload on 22 April 2023.
Assemblies
Individual 2 Primary Assembly
Version assembly_curated from 16 August 2023
rPodCre2.pri.cur.20230816.fasta.gz (436.2 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 116.66 Mbp 2 128.45 Mbp
20 4 89.54 Mbp 3 126.79 Mbp
30 6 78.54 Mbp 5 103.04 Mbp
40 9 63.19 Mbp 7 94.62 Mbp
50 12 51.11 Mbp 9 81.67 Mbp
60 17 34.45 Mbp 12 63.68 Mbp
70 28 11.80 Mbp 15 51.45 Mbp
80 0 0
90 0 0
100 0 0
0.780x 98 1.51 Gbp 51 1.51 Gbp
NG based on genome size 1.93 Gbp.
Individual 2 Alternate Assembly
Version assembly_curated from 16 August 2023
rPodCre2.alt.cur.20230816.fasta.gz (398.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 32 4.92 Mbp 32 4.92 Mbp
20 78 3.58 Mbp 78 3.58 Mbp
30 139 2.80 Mbp 139 2.80 Mbp
40 221 1.99 Mbp 221 1.99 Mbp
50 337 1.40 Mbp 337 1.40 Mbp
60 517 0.81 Mbp 517 0.81 Mbp
70 1231 37.58 Kbp 1231 37.58 Kbp
80 0 0
90 0 0
100 0 0
0.710x 1936 1.37 Gbp 1936 1.37 Gbp
NG based on genome size 1.93 Gbp.
Individual 2 Mitochondrial Assembly
Version assembly_MT_cambridge from 3 May 2023
rPodCre2.MT.20230503.fasta.gz (5.3 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.