Plecotus auritus

brown big-eared bat

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: mPleAur
  name: Plecotus auritus
  taxon_id: 61862
  common_name: brown big-eared bat
  order:
    name: Chiroptera
  family:
    name: Vespertilionidae
  individuals:
    - short_name: mPleAur1
      biosample_id: SAMEA110056142
      sex: female
  genome_size: 2180940000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) mPleAur1 228.70 Gbp 104.86x 140.7 GiB
Arima mPleAur1 118.18 Gbp 54.19x 35.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.18 Gbp.
Last upload on 30 November 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mPleAur1 PacBio HiFi (.bam) 228.70 Gbp 104.86x 140.7 GiB
Arima 118.18 Gbp 54.19x 35.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.18 Gbp.
Last upload on 30 November 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 12 September 2023
mPleAur1.pri.cur.20230912.fasta.gz (623.7 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 25 7.40 Mbp 1 248.79 Mbp
20 60 5.42 Mbp 2 230.26 Mbp
30 105 4.45 Mbp 3 228.11 Mbp
40 161 3.54 Mbp 4 192.80 Mbp
50 229 2.94 Mbp 6 179.15 Mbp
60 310 2.42 Mbp 7 178.55 Mbp
70 411 1.93 Mbp 8 176.15 Mbp
80 543 1.39 Mbp 9 156.20 Mbp
90 745 0.83 Mbp 11 62.50 Mbp
100 0 0
0.992x 1302 2.16 Gbp 65 2.16 Gbp
NG based on genome size 2.18 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 12 September 2023
mPleAur1.alt.cur.20230912.fasta.gz (605.2 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 58 2.91 Mbp 58 2.91 Mbp
20 147 2.09 Mbp 147 2.09 Mbp
30 263 1.68 Mbp 263 1.68 Mbp
40 408 1.36 Mbp 408 1.36 Mbp
50 589 1.07 Mbp 589 1.07 Mbp
60 825 0.82 Mbp 825 0.82 Mbp
70 1139 0.59 Mbp 1139 0.59 Mbp
80 1596 375.18 Kbp 1596 375.18 Kbp
90 2570 114.39 Kbp 2570 114.39 Kbp
100 0 0
0.960x 5570 2.09 Gbp 5570 2.09 Gbp
NG based on genome size 2.18 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 12 August 2023
mPleAur1.MT.20230812.fasta.gz (5.3 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.