Pipistrellus pipistrellus

common pipistrelle

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank mPipPip1: GCA_903992545.1 mPipPip1: GCA_903992515.1
ENA mPipPip1: GCA_903992545.1 mPipPip1: GCA_903992515.1
UCSC Genome Browser mPipPip1: GCA_903992545.1 mPipPip1: GCA_903992515.1

metadata.yaml (view) (edit on github)
species:
  short_name: mPipPip
  name: Pipistrellus pipistrellus
  taxon_id: 59474
  common_name: common pipistrelle
  order:
    name: Chiroptera
  family:
    name: Vespertilionidae
  individuals:
    - short_name: mPipPip1
      biosample_id: SAMEA994724
      sex: male
    - short_name: mPipPip2
      biosample_id: SAMEA9921453
      sex: female
  genome_size:
  genome_size_method:
  project: [ vgp ]
CC BY-SA 2.0, Gilles San Martin (flickr)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR mPipPip1 125.41 Gbp 71.12x 218.0 GiB
PacBio HiFi (.bam) mPipPip2 8.62 Gbp 4.89x 29.7 GiB
10x mPipPip1 134.75 Gbp 76.41x 83.3 GiB
Arima mPipPip2 247.70 Gbp 140.46x 158.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.76 Gbp.
Last upload on 9 February 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mPipPip1 PacBio CLR 125.41 Gbp 71.12x 218.0 GiB
10x 134.75 Gbp 76.41x 83.3 GiB
mPipPip2 PacBio HiFi (.bam) 8.62 Gbp 4.89x 29.7 GiB
Arima 247.70 Gbp 140.46x 158.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.76 Gbp.
Last upload on 9 February 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 24 July 2020
mPipPip1.pri.cur.20200724.fasta.gz (512.2 MiB)

Quality: 137.5 errors/Mb (QV=38.62)

Contigs Scaffolds
NG LG Len LG Len
10 10 13.03 Mbp 0 203.62 Mbp
20 25 9.74 Mbp 1 194.57 Mbp
30 45 7.61 Mbp 2 188.94 Mbp
40 72 5.66 Mbp 4 100.18 Mbp
50 107 4.45 Mbp 5 94.93 Mbp
60 158 2.93 Mbp 8 83.52 Mbp
70 232 1.98 Mbp 10 71.50 Mbp
80 343 1.22 Mbp 13 53.28 Mbp
90 569 498.29 Kbp 16 46.23 Mbp
100 1868 2.62 Kbp 322 11.95 Kbp
1.000x 1869 1.76 Gbp 323 1.76 Gbp
NG based on genome size 1.76 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 24 July 2020
mPipPip1.alt.cur.20200724.fasta.gz (459.9 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 175 0.68 Mbp 175 0.68 Mbp
20 453 485.01 Kbp 453 485.14 Kbp
30 831 365.80 Kbp 830 366.29 Kbp
40 1315 291.29 Kbp 1314 291.57 Kbp
50 1928 229.98 Kbp 1927 230.23 Kbp
60 2701 183.12 Kbp 2699 183.17 Kbp
70 3678 143.59 Kbp 3676 143.67 Kbp
80 4939 108.99 Kbp 4936 109.01 Kbp
90 6684 73.49 Kbp 6680 73.56 Kbp
100 10458 392 bp 10446 392 bp
1.000x 10459 1.58 Gbp 10447 1.58 Gbp
NG based on genome size 1.76 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 3 October 2019
mPipPip1.MT.20191003.fasta.gz (4.9 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.