Phyllostomus discolor

pale spear-nosed bat

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank mPhyDis1: GCA_004126475.3 mPhyDis1: GCA_004115245.2
ENA mPhyDis1: GCA_004126475.3 mPhyDis1: GCA_004115245.2
UCSC Genome Browser mPhyDis1: GCA_004126475.3 mPhyDis1: GCA_004115245.2

metadata.yaml (view) (edit on github)
species:
  short_name: mPhyDis
  name: Phyllostomus discolor
  taxon_id: 89673
  common_name: pale spear-nosed bat
  order:
    name: Chiroptera
  family:
    name: Phyllostomidae
  individuals:
    - short_name: mPhyDis1
  genome_size: 2213798723
  genome_size_method:
  project: [ vgp ]
CC BY-SA 4.0 Juan Carlos Vargas Mena (wikimedia)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR mPhyDis1 162.91 Gbp 73.59x 292.2 GiB
10x mPhyDis1 240.11 Gbp 108.46x 145.4 GiB
Bionano mPhyDis1 N/A 487.36x 1.4 GiB
Arima mPhyDis1 194.47 Gbp 87.85x 99.8 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.21 Gbp.
Last upload on 28 May 2018.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mPhyDis1 PacBio CLR 162.91 Gbp 73.59x 292.2 GiB
10x 240.11 Gbp 108.46x 145.4 GiB
Bionano N/A 487.36x 1.4 GiB
Arima 194.47 Gbp 87.85x 99.8 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.21 Gbp.
Last upload on 28 May 2018.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 4 May 2020
mPhyDis1.pri.cur.20200504.fasta.gz (613.4 MiB)

Quality: 139.2 errors/Mb (QV=38.56)

Contigs Scaffolds
NG LG Len LG Len
10 11 16.53 Mbp 1 217.37 Mbp
20 26 12.27 Mbp 2 214.90 Mbp
30 46 9.82 Mbp 3 209.86 Mbp
40 71 8.12 Mbp 4 175.15 Mbp
50 102 6.38 Mbp 5 171.74 Mbp
60 141 4.64 Mbp 6 139.25 Mbp
70 198 3.31 Mbp 8 107.34 Mbp
80 281 2.04 Mbp 11 95.22 Mbp
90 460 0.71 Mbp 13 77.04 Mbp
100 0 0
0.946x 961 2.09 Gbp 77 2.11 Gbp
NG based on genome size 2.21 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 4 May 2020
mPhyDis1.alt.cur.20200504.fasta.gz (608.3 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 61 2.82 Mbp 61 2.82 Mbp
20 157 1.94 Mbp 157 1.94 Mbp
30 289 1.46 Mbp 289 1.46 Mbp
40 464 1.11 Mbp 464 1.11 Mbp
50 693 0.84 Mbp 693 0.84 Mbp
60 1005 0.61 Mbp 1005 0.61 Mbp
70 1459 389.41 Kbp 1459 389.41 Kbp
80 2302 164.72 Kbp 2300 166.07 Kbp
90 6922 23.22 Kbp 6884 23.27 Kbp
100 0 0
0.927x 10895 2.05 Gbp 10857 2.05 Gbp
NG based on genome size 2.21 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 3 October 2019
mPhyDis1.MT.20191003.fasta.gz (5.0 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.