Phalacrocorax carbo

great cormorant

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: bPhaCar
  name: Phalacrocorax carbo
  taxon_id: 9209
  common_name: great cormorant
  order:
    name: Suliformes
  family:
    name: Phalacrocoracidae
  individuals:
    - short_name: bPhaCar2
      biosample_id: SAMEA8228692
      sex: female
    - short_name: bPhaCar3
      biosample_id: SAMEA112468128
      sex: male
  genome_size: 1398540000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) bPhaCar2 50.42 Gbp 36.05x 30.8 GiB
Arima bPhaCar3 76.69 Gbp 54.84x 23.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.40 Gbp.
Last upload on 30 November 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bPhaCar2 PacBio HiFi (.bam) 50.42 Gbp 36.05x 30.8 GiB
bPhaCar3 Arima 76.69 Gbp 54.84x 23.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.40 Gbp.
Last upload on 30 November 2023.
Assemblies
Individual 2 Primary Assembly
Version assembly_curated from 10 January 2024
bPhaCar2.pri.cur.20240110.fasta.gz (367.5 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 10 11.66 Mbp 1 218.91 Mbp
20 24 9.16 Mbp 2 168.49 Mbp
30 42 6.61 Mbp 3 129.75 Mbp
40 67 5.11 Mbp 4 85.78 Mbp
50 97 4.06 Mbp 6 72.24 Mbp
60 136 3.13 Mbp 8 55.33 Mbp
70 191 2.20 Mbp 11 26.94 Mbp
80 271 1.35 Mbp 18 13.92 Mbp
90 482 222.56 Kbp 64 0.54 Mbp
100 0 0
0.918x 844 1.28 Gbp 351 1.28 Gbp
NG based on genome size 1.40 Gbp.
Individual 2 Alternate Assembly
Version assembly_curated from 10 January 2024
bPhaCar2.alt.cur.20240110.fasta.gz (334.6 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 38 2.85 Mbp 38 2.85 Mbp
20 95 2.20 Mbp 95 2.20 Mbp
30 170 1.62 Mbp 170 1.62 Mbp
40 267 1.30 Mbp 267 1.30 Mbp
50 388 1.01 Mbp 388 1.01 Mbp
60 552 0.72 Mbp 552 0.72 Mbp
70 807 421.96 Kbp 807 421.96 Kbp
80 1444 76.54 Kbp 1444 76.54 Kbp
90 0 0
100 0 0
0.833x 3116 1.16 Gbp 3116 1.16 Gbp
NG based on genome size 1.40 Gbp.
Individual 2 Mitochondrial Assembly
Version assembly_MT_cambridge from 2 December 2023
bPhaCar2.MT.20231202.fasta.gz (5.7 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.