Pelodytes ibericus

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Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) aPelIbe1 70.56 Gbp N/A 222.6 GiB
Arima aPelIbe1 106.00 Gbp N/A 49.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 5 April 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
aPelIbe1 PacBio HiFi (.bam) 70.56 Gbp N/A 222.6 GiB
Arima 106.00 Gbp N/A 49.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 5 April 2023.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_curated from 14 April 2023
aPelIbe1.hap1.decon.20230414.fasta.gz (534.2 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 5 29.57 Mbp 1 293.03 Mbp
20 13 20.16 Mbp 2 229.98 Mbp
30 24 15.31 Mbp 3 222.95 Mbp
40 40 11.22 Mbp 4 208.84 Mbp
50 62 7.91 Mbp 5 199.28 Mbp
60 92 5.65 Mbp 6 187.61 Mbp
70 137 3.80 Mbp 7 168.42 Mbp
80 205 2.47 Mbp 9 79.13 Mbp
90 315 1.24 Mbp 12 46.26 Mbp
100 794 7.00 Kbp 240 7.00 Kbp
1.000x 794 2.03 Gbp 240 2.03 Gbp
NG based on genome size .
Individual 1 Haplotype 2 Assembly
Version assembly_curated from 14 April 2023
aPelIbe1.hap2.decon.20230414.fasta.gz (535.7 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 7 25.23 Mbp 1 292.93 Mbp
20 16 20.10 Mbp 2 228.76 Mbp
30 29 13.26 Mbp 3 223.65 Mbp
40 47 10.31 Mbp 4 210.34 Mbp
50 70 7.74 Mbp 5 208.48 Mbp
60 101 5.73 Mbp 6 186.92 Mbp
70 145 3.87 Mbp 7 176.90 Mbp
80 209 2.52 Mbp 9 83.01 Mbp
90 316 1.37 Mbp 12 46.73 Mbp
100 784 2.00 Kbp 245 2.00 Kbp
1.000x 784 2.05 Gbp 245 2.05 Gbp
NG based on genome size .
Individual 1 Mitochondrial Assembly
Version assembly_vgp_HiC_2.0 from 8 March 2023
aPelIbe1.mito.20230308.fasta.gz (5.6 KiB)

Quality: not computed
Assembly Metadata
assembly_vgp_HiC_2.0/aPelIbe1.yaml (view)
species: Pelodytes ibericus
specimen: aPelIbe1
projects:
  - vgp
hap1: s3://genomeark/species/Pelodytes_ibericus/aPelIbe1/assembly_vgp_HiC_2.0/aPelIbe1.HiC.hap1.20230308.fasta.gz
hap2: s3://genomeark/species/Pelodytes_ibericus/aPelIbe1/assembly_vgp_HiC_2.0/aPelIbe1.HiC.hap2.20230308.fasta.gz
pctg: s3://genomeark/species/Pelodytes_ibericus/aPelIbe1/assembly_vgp_HiC_2.0/aPelIbe1.HiC.pctg.20230308.fasta.gz
mito: s3://genomeark/species/Pelodytes_ibericus/aPelIbe1/assembly_vgp_HiC_2.0/aPelIbe1.mito.20230308.fasta.gz
pipeline:
  - deepconsensus (1.1)
  - hifiasm (0.18.7-r519)
  - purge_dups (1.2.5)
  - yahs (1.2a.2)
  - deepVariant polishing (1.4)
  - MitoHiFi (3.0.0)
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.