Patagioenas fasciata

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Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.fq) bPatFas1 79.48 Gbp N/A 65.8 GiB
Arima bPatFas1 67.07 Gbp N/A 35.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 18 July 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bPatFas1 PacBio HiFi (.fq) 79.48 Gbp N/A 65.8 GiB
Arima 67.07 Gbp N/A 35.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 18 July 2023.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_curated from 5 January 2024
bPatFas1.hap1.cur.20240105.fasta.gz (293.1 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 3 39.76 Mbp 1 214.99 Mbp
20 6 30.18 Mbp 2 160.85 Mbp
30 11 22.52 Mbp 2 160.85 Mbp
40 17 20.64 Mbp 3 123.62 Mbp
50 23 18.04 Mbp 5 70.09 Mbp
60 30 14.38 Mbp 7 44.38 Mbp
70 40 10.08 Mbp 10 28.34 Mbp
80 55 5.70 Mbp 16 17.80 Mbp
90 88 2.38 Mbp 28 5.64 Mbp
100 672 588 bp 528 15.65 Kbp
1.000x 672 1.19 Gbp 528 1.20 Gbp
NG based on genome size .
Individual 1 Haplotype 2 Assembly
Version assembly_curated from 5 January 2024
bPatFas1.hap2.cur.20240105.fasta.gz (337.6 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 4 42.88 Mbp 1 215.60 Mbp
20 7 35.99 Mbp 2 170.13 Mbp
30 13 23.05 Mbp 3 126.66 Mbp
40 19 21.46 Mbp 4 85.91 Mbp
50 27 17.01 Mbp 6 71.51 Mbp
60 36 12.58 Mbp 9 42.88 Mbp
70 51 7.84 Mbp 13 25.31 Mbp
80 76 3.84 Mbp 21 14.07 Mbp
90 134 1.41 Mbp 42 2.81 Mbp
100 682 6.07 Kbp 464 12.93 Kbp
1.000x 682 1.40 Gbp 464 1.41 Gbp
NG based on genome size .
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 5 January 2024
bPatFas1.MT.20240105.fasta.gz (5.3 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.