Parambassis ranga

Indian glassy fish

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank fParRan2: GCA_900634625.2 fParRan2: GCA_900651595.1
ENA fParRan2: GCA_900634625.2 fParRan2: GCA_900651595.1
UCSC Genome Browser fParRan2: GCA_900634625.2 fParRan2: GCA_900651595.1

metadata.yaml (view) (edit on github)
species:
  short_name: fParRan
  name: Parambassis ranga
  taxon_id: 210632
  common_name: Indian glassy fish
  order:
    name: Ovalentaria
  family:
    name: Ambassidae
  individuals:
    - short_name: fParRan2
  genome_size:
  genome_size_method:
  project: [ vgp ]
CC BY-SA 2.5 opencage (wikimedia)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR fParRan2 54.96 Gbp 99.75x 95.9 GiB
10x fParRan2 127.53 Gbp 231.45x 81.2 GiB
Bionano fParRan2 N/A 1321.04x 1.1 GiB
Arima fParRan2 58.97 Gbp 107.01x 29.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.55 Gbp.
Last upload on 29 August 2018.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fParRan2 PacBio CLR 54.96 Gbp 99.75x 95.9 GiB
10x 127.53 Gbp 231.45x 81.2 GiB
Bionano N/A 1321.04x 1.1 GiB
Arima 58.97 Gbp 107.01x 29.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.55 Gbp.
Last upload on 29 August 2018.
Assemblies
Individual 2 Primary Assembly
Version assembly_curated from 5 December 2018
fParRan2.pri.cur.20181205.fasta.gz (143.7 MiB)

Quality: 58.9 errors/Mb (QV=42.30)

Contigs Scaffolds
NG LG Len LG Len
10 3 12.29 Mbp 1 32.18 Mbp
20 8 10.80 Mbp 3 26.05 Mbp
30 13 9.15 Mbp 5 24.70 Mbp
40 21 6.50 Mbp 7 24.49 Mbp
50 30 5.08 Mbp 9 22.99 Mbp
60 42 4.13 Mbp 12 22.47 Mbp
70 59 2.51 Mbp 14 21.89 Mbp
80 88 1.31 Mbp 17 18.87 Mbp
90 167 378.47 Kbp 20 16.01 Mbp
100 1678 6 bp 155 1.17 Kbp
1.000x 1679 0.54 Gbp 156 0.55 Gbp
NG based on genome size 0.55 Gbp.
Individual 2 Alternate Assembly
Version assembly_curated from 5 December 2018
fParRan2.alt.cur.20181205.fasta.gz (139.6 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 26 1.40 Mbp 25 1.49 Mbp
20 69 0.97 Mbp 66 0.99 Mbp
30 128 0.68 Mbp 122 0.73 Mbp
40 210 0.52 Mbp 201 0.53 Mbp
50 315 409.59 Kbp 305 417.10 Kbp
60 450 316.35 Kbp 437 325.33 Kbp
70 630 230.93 Kbp 613 235.11 Kbp
80 876 165.81 Kbp 856 169.56 Kbp
90 1251 101.26 Kbp 1225 102.64 Kbp
100 2471 6 bp 2241 173 bp
1.000x 2472 484.49 Mbp 2242 486.55 Mbp
NG based on genome size 0.55 Gbp.
Individual 2 Mitochondrial Assembly
Version assembly_MT_rockefeller from 16 December 2019
fParRan2.MT.20191216.fasta.gz (5.0 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.