Nyctibius grandis

great potoo

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank bNycGra1: GCA_013368605.1 bNycGra1: GCA_013368595.1
ENA bNycGra1: GCA_013368605.1 bNycGra1: GCA_013368595.1
UCSC Genome Browser bNycGra1: GCA_013368605.1 bNycGra1: GCA_013368595.1

metadata.yaml (view) (edit on github)
species:
  common_name: great potoo
  family:
    name: Nyctibiidae
  genome_size: 1000000000
  genome_size_method: null
  individuals:
  - short_name: bNycGra1
  name: Nyctibius grandis
  order:
    name: Caprimulgiformes
  short_name: bNycGra
  taxon_id: 48427
  project: [ vgp ]
CC BY-NC-SA 2.0 Cláudio Dias Timm (flickr)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR bNycGra1 88.38 Gbp 88.38x 153.6 GiB
10x bNycGra1 130.46 Gbp 130.46x 63.0 GiB
Bionano bNycGra1 N/A 448.15x 795.8 MiB
Arima bNycGra1 112.31 Gbp 112.31x 59.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.00 Gbp.
Last upload on 30 October 2019.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bNycGra1 PacBio CLR 88.38 Gbp 88.38x 153.6 GiB
10x 130.46 Gbp 130.46x 63.0 GiB
Bionano N/A 448.15x 795.8 MiB
Arima 112.31 Gbp 112.31x 59.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.00 Gbp.
Last upload on 30 October 2019.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 2 March 2020
bNycGra1.pri.cur.20200302.fasta.gz (365.9 MiB)

Quality: 59.6 errors/Mb (QV=42.25)

Contigs Scaffolds
NG LG Len LG Len
10 1 94.30 Mbp 0 133.76 Mbp
20 2 90.86 Mbp 1 127.81 Mbp
30 3 62.18 Mbp 2 115.30 Mbp
40 5 51.35 Mbp 3 105.21 Mbp
50 7 28.62 Mbp 4 99.98 Mbp
60 11 23.41 Mbp 5 92.36 Mbp
70 16 21.07 Mbp 6 88.16 Mbp
80 21 15.75 Mbp 7 59.94 Mbp
90 28 12.12 Mbp 9 43.94 Mbp
100 39 8.12 Mbp 12 26.76 Mbp
1.250x 433 1.25 Gbp 190 1.26 Gbp
NG based on genome size 1.00 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 2 March 2020
bNycGra1.alt.cur.20200302.fasta.gz (308.8 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 10 7.06 Mbp 10 7.06 Mbp
20 27 5.33 Mbp 27 5.33 Mbp
30 48 4.28 Mbp 48 4.28 Mbp
40 74 3.31 Mbp 74 3.31 Mbp
50 109 2.55 Mbp 109 2.55 Mbp
60 153 2.05 Mbp 153 2.05 Mbp
70 208 1.55 Mbp 208 1.55 Mbp
80 282 1.15 Mbp 282 1.15 Mbp
90 393 0.66 Mbp 393 0.67 Mbp
100 712 133.87 Kbp 705 135.65 Kbp
1.041x 1409 1.04 Gbp 1395 1.04 Gbp
NG based on genome size 1.00 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 2 October 2019
bNycGra1.MT.20191002.fasta.gz (5.2 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.