Notolepis coatsi

Antarctic jonasfish

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: fNotCoa
  name: Notolepis coatsi
  taxon_id: 948063
  common_name: Antarctic jonasfish
  order:
    name: Aulopiformes
  family:
    name: Paralepididae
  individuals:
    - short_name: fNotCoa1
      biosample_id: SAMEA8748806
      sex:
  genome_size:
  genome_size_method:
  project: [ vgp ]
CC BY-NC 3.0 U.N. FAO (FishBase)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) fNotCoa1 133.49 Gbp 38.94x 187.7 GiB
Arima fNotCoa1 105.46 Gbp 30.77x 49.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.43 Gbp.
Last upload on 14 August 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fNotCoa1 PacBio HiFi (.bam) 133.49 Gbp 38.94x 187.7 GiB
Arima 105.46 Gbp 30.77x 49.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.43 Gbp.
Last upload on 14 August 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 2 March 2024
fNotCoa1.pri.cur.20240302.fasta.gz (0.9 GiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 155 1.60 Mbp 2 233.75 Mbp
20 421 1.08 Mbp 3 214.42 Mbp
30 790 0.81 Mbp 5 208.11 Mbp
40 1285 0.60 Mbp 6 191.19 Mbp
50 1951 444.00 Kbp 8 155.91 Mbp
60 2863 320.33 Kbp 11 133.95 Mbp
70 4172 215.55 Kbp 13 129.13 Mbp
80 6205 130.83 Kbp 16 112.90 Mbp
90 9920 65.46 Kbp 20 75.73 Mbp
100 21096 16 bp 5983 979 bp
1.000x 21096 3.42 Gbp 5983 3.43 Gbp
NG based on genome size 3.43 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 2 March 2024
fNotCoa1.alt.cur.20240302.fasta.gz (820.0 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 397 0.53 Mbp 397 0.53 Mbp
20 1115 357.70 Kbp 1115 357.70 Kbp
30 2123 258.12 Kbp 2123 258.12 Kbp
40 3483 192.80 Kbp 3483 192.80 Kbp
50 5296 146.77 Kbp 5296 146.77 Kbp
60 7700 109.74 Kbp 7700 109.77 Kbp
70 10957 79.39 Kbp 10957 79.39 Kbp
80 15586 54.44 Kbp 15585 54.44 Kbp
90 22753 33.39 Kbp 22751 33.39 Kbp
100 36192 29 bp 36180 2.51 Kbp
1.000x 36192 3.04 Gbp 36180 3.04 Gbp
NG based on genome size 3.43 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 20 November 2023
fNotCoa1.MT.20231120.fasta.gz (6.4 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.