Nesoenas mayeri

pink pigeon

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: bNesMay
  name: Nesoenas mayeri
  taxon_id: 187126
  common_name: pink pigeon
  order:
    name: Columbiformes
  family:
    name: Columbidae
  individuals:
    - short_name: bNesMay2
      biosample_id: SAMEA12922160
      sex: female
  genome_size: 1440105000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) bNesMay2 37.33 Gbp 25.92x 27.4 GiB
Arima bNesMay2 111.94 Gbp 77.73x 34.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.44 Gbp.
Last upload on 26 June 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bNesMay2 PacBio HiFi (.bam) 37.33 Gbp 25.92x 27.4 GiB
Arima 111.94 Gbp 77.73x 34.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.44 Gbp.
Last upload on 26 June 2023.
Assemblies
Individual 2 Primary Assembly
Version assembly_curated from 16 August 2023
bNesMay2.pri.cur.20230816.fasta.gz (342.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 11 11.28 Mbp 1 214.15 Mbp
20 25 8.51 Mbp 2 164.70 Mbp
30 45 6.45 Mbp 3 121.94 Mbp
40 71 4.92 Mbp 4 78.20 Mbp
50 105 3.75 Mbp 6 69.28 Mbp
60 151 2.54 Mbp 10 31.79 Mbp
70 225 1.45 Mbp 16 20.36 Mbp
80 394 372.51 Kbp 30 4.18 Mbp
90 0 0
100 0 0
0.822x 652 1.18 Gbp 143 1.18 Gbp
NG based on genome size 1.44 Gbp.
Individual 2 Alternate Assembly
Version assembly_curated from 16 August 2023
bNesMay2.alt.cur.20230816.fasta.gz (251.6 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 31 3.63 Mbp 31 3.63 Mbp
20 78 2.65 Mbp 78 2.65 Mbp
30 143 1.86 Mbp 143 1.86 Mbp
40 234 1.33 Mbp 234 1.33 Mbp
50 388 0.68 Mbp 388 0.68 Mbp
60 1127 30.54 Kbp 1127 30.54 Kbp
70 0 0
80 0 0
90 0 0
100 0 0
0.602x 1277 0.87 Gbp 1277 0.87 Gbp
NG based on genome size 1.44 Gbp.
Individual 2 Mitochondrial Assembly
Version assembly_MT_cambridge from 30 June 2023
bNesMay2.MT.20230630.fasta.gz (5.3 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.