Narcine bancroftii

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Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.fq) sNarBan1 119.75 Gbp N/A 98.2 GiB
Arima sNarBan1 329.51 Gbp N/A 162.6 GiB
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 22 February 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
sNarBan1 PacBio HiFi (.fq) 119.75 Gbp N/A 98.2 GiB
Arima 329.51 Gbp N/A 162.6 GiB
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 22 February 2023.
Assemblies
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 16 May 2023
sNarBan1.MT.20230516.fasta.gz (5.7 KiB)

Quality: not computed
Assembly Metadata
assembly_vgp_HiC_2.0/sNarBan1.yml (view)
species: Narcine bancroftii
specimen: sNarBan1
projects: 
  - vgp
data_location: S3
release_to: S3
hap1: s3://genomeark/species/Narcine_bancroftii/sNarBan1/assembly_vgp_HiC_2.0/sNarBan1.HiC.hap1.20230516.fasta.gz
hap2: s3://genomeark/species/Narcine_bancroftii/sNarBan1/assembly_vgp_HiC_2.0/sNarBan1.HiC.hap2.20230516.fasta.gz
pretext_hap1: s3://genomeark/species/Narcine_bancroftii/sNarBan1/assembly_vgp_HiC_2.0/evaluation/hap1/pretext/sNarBan1_hap1__s2_heatmap.pretext
pretext_hap2: s3://genomeark/species/Narcine_bancroftii/sNarBan1/assembly_vgp_HiC_2.0/evaluation/hap2/pretext/sNarBan1_hap2__s2_heatmap.pretext
kmer_spectra_img: s3://genomeark/species/Narcine_bancroftii/sNarBan1/assembly_vgp_HiC_2.0/evaluation/merqury/sNarBan1_png/
mito: s3://genomeark/species/Narcine_bancroftii/sNarBan1/assembly_MT_rockefeller/sNarBan1.MT.20230516.fasta.gz
mito_gb: s3://genomeark/species/Narcine_bancroftii/sNarBan1/assembly_MT_rockefeller/sNarBan1.MT.20230516.gb
pacbio_read_dir: s3://genomeark/species/Narcine_bancroftii/sNarBan1/genomic_data/pacbio_hifi/
pacbio_read_type: hifi
hic_read_dir: s3://genomeark/species/Narcine_bancroftii/sNarBan1/genomic_data/arima/
pipeline:
  - hifiasm (0.19.3+galaxy0)
  - yahs (1.2a.2+galaxy0)
assembled_by_group: Rockefeller
notes: This was a hifiasm-HiC assembly of sNarBan1, resulting in two complete haplotypes. This individual did not have bionano data. HiC scaffolding was performed with yahs. The HiC prep was Arima kit 2. The assembly was performed on the Galaxy EU servers. 
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.