Myripristis murdjan

pinecone soldierfish

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank fMyrMur1: GCA_902150065.1 fMyrMur1: GCA_902148815.1
ENA fMyrMur1: GCA_902150065.1 fMyrMur1: GCA_902148815.1
UCSC Genome Browser fMyrMur1: GCA_902150065.1 fMyrMur1: GCA_902148815.1

metadata.yaml (view) (edit on github)
species:
  short_name: fMyrMur
  name: Myripristis murdjan
  taxon_id: 586833
  common_name: pinecone soldierfish
  order:
    name: Holocentriformes
  family:
    name: Holocentridae
  individuals:
    - short_name: fMyrMur1
      biosample_id: SAMEA4872133
      sex:
  genome_size:
  genome_size_method:
  project: [ vgp ]
CC BY 2.0 Rickard Zerpe (flickr)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR fMyrMur1 49.44 Gbp 59.19x 85.7 GiB
10x fMyrMur1 144.84 Gbp 173.40x 81.5 GiB
Bionano fMyrMur1 N/A 1539.69x 1.8 GiB
Arima fMyrMur1 136.22 Gbp 163.09x 84.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.84 Gbp.
Last upload on 1 May 2019.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fMyrMur1 PacBio CLR 49.44 Gbp 59.19x 85.7 GiB
10x 144.84 Gbp 173.40x 81.5 GiB
Bionano N/A 1539.69x 1.8 GiB
Arima 136.22 Gbp 163.09x 84.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.84 Gbp.
Last upload on 1 May 2019.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 21 June 2019
fMyrMur1.pri.cur.20190621.fasta.gz (241.6 MiB)

Quality: 49.6 errors/Mb (QV=43.05)

Contigs Scaffolds
NG LG Len LG Len
10 2 27.28 Mbp 1 42.40 Mbp
20 6 24.31 Mbp 3 39.21 Mbp
30 9 20.03 Mbp 6 36.53 Mbp
40 14 17.27 Mbp 8 35.81 Mbp
50 19 14.48 Mbp 10 34.95 Mbp
60 27 8.34 Mbp 13 33.92 Mbp
70 39 5.79 Mbp 15 33.42 Mbp
80 57 3.78 Mbp 18 31.82 Mbp
90 89 1.76 Mbp 20 29.23 Mbp
100 339 862 bp 86 862 bp
1.000x 340 0.83 Gbp 87 0.84 Gbp
NG based on genome size 0.84 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 21 June 2019
fMyrMur1.alt.cur.20190621.fasta.gz (237.9 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 28 2.17 Mbp 28 2.19 Mbp
20 75 1.38 Mbp 74 1.39 Mbp
30 144 1.03 Mbp 143 1.03 Mbp
40 236 0.79 Mbp 235 0.79 Mbp
50 353 0.61 Mbp 352 0.61 Mbp
60 506 487.33 Kbp 505 487.33 Kbp
70 691 394.59 Kbp 690 394.59 Kbp
80 930 291.95 Kbp 929 292.76 Kbp
90 1284 183.65 Kbp 1282 183.83 Kbp
100 2198 481 bp 2192 810 bp
1.000x 2199 0.82 Gbp 2193 0.82 Gbp
NG based on genome size 0.84 Gbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.