Myotis daubentonii

Daubenton's bat

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: mMyoDau
  name: Myotis daubentonii
  taxon_id: 98922
  common_name: Daubenton's bat
  order:
    name: Chiroptera
  family:
    name: Vespertilionidae
  individuals:
    - short_name: mMyoDau2
      biosample_id: SAMEA9921455
      sex: male
  genome_size: 2210280000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) mMyoDau2 78.22 Gbp 35.39x 120.3 GiB
Arima mMyoDau2 234.94 Gbp 106.29x 70.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.21 Gbp.
Last upload on 8 August 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mMyoDau2 PacBio HiFi (.bam) 78.22 Gbp 35.39x 120.3 GiB
Arima 234.94 Gbp 106.29x 70.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.21 Gbp.
Last upload on 8 August 2023.
Assemblies
Individual 2 Primary Assembly
Version assembly_curated from 16 August 2023
mMyoDau2.pri.cur.20230816.fasta.gz (603.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 27 6.73 Mbp 1 234.11 Mbp
20 62 5.78 Mbp 2 222.57 Mbp
30 105 4.61 Mbp 3 220.08 Mbp
40 159 3.61 Mbp 5 116.92 Mbp
50 226 2.97 Mbp 7 102.23 Mbp
60 311 2.38 Mbp 9 95.74 Mbp
70 417 1.81 Mbp 12 82.56 Mbp
80 557 1.36 Mbp 15 59.70 Mbp
90 775 0.72 Mbp 19 44.30 Mbp
100 0 0
0.963x 1221 2.13 Gbp 122 2.13 Gbp
NG based on genome size 2.21 Gbp.
Individual 2 Alternate Assembly
Version assembly_curated from 16 August 2023
mMyoDau2.alt.cur.20230816.fasta.gz (555.2 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 77 2.21 Mbp 77 2.21 Mbp
20 192 1.70 Mbp 192 1.70 Mbp
30 338 1.34 Mbp 338 1.34 Mbp
40 523 1.06 Mbp 523 1.06 Mbp
50 756 0.84 Mbp 756 0.84 Mbp
60 1066 0.61 Mbp 1066 0.61 Mbp
70 1492 426.56 Kbp 1492 426.56 Kbp
80 2199 213.68 Kbp 2199 213.68 Kbp
90 0 0
100 0 0
0.877x 4930 1.94 Gbp 4930 1.94 Gbp
NG based on genome size 2.21 Gbp.
Individual 2 Mitochondrial Assembly
Version assembly_MT_cambridge from 27 July 2023
mMyoDau2.MT.20230727.fasta.gz (5.3 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.