Muntiacus reevesi

Reeves' muntjac

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: mMunRee
  name: Muntiacus reevesi
  taxon_id: 9886
  common_name: Reeves' muntjac
  order:
    name: Artiodactyla
  family:
    name: Cervidae
  individuals:
    - short_name: mMunRee1
      biosample_id: SAMEA110690972
      sex: female
    - short_name: mMunRee2
      biosample_id: SAMEA110690973
      sex: male
  genome_size: 2924220000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) mMunRee1 123.96 Gbp 42.39x 61.0 GiB
Arima mMunRee2 303.22 Gbp 103.69x 90.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.92 Gbp.
Last upload on 15 December 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mMunRee1 PacBio HiFi (.bam) 123.96 Gbp 42.39x 61.0 GiB
mMunRee2 Arima 303.22 Gbp 103.69x 90.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.92 Gbp.
Last upload on 15 December 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 26 January 2024
mMunRee1.pri.cur.20240126.fasta.gz (764.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 18 13.65 Mbp 2 283.02 Mbp
20 42 10.44 Mbp 3 272.12 Mbp
30 75 7.98 Mbp 4 171.98 Mbp
40 116 6.56 Mbp 6 125.49 Mbp
50 166 5.16 Mbp 8 98.90 Mbp
60 230 4.13 Mbp 11 85.65 Mbp
70 313 2.90 Mbp 15 69.96 Mbp
80 438 1.76 Mbp 20 59.91 Mbp
90 757 274.34 Kbp 100 404.16 Kbp
100 0 0
0.908x 950 2.66 Gbp 268 2.66 Gbp
NG based on genome size 2.92 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 26 January 2024
mMunRee1.alt.cur.20240126.fasta.gz (799.8 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 52 4.01 Mbp 52 4.01 Mbp
20 142 2.69 Mbp 142 2.69 Mbp
30 271 1.94 Mbp 271 1.94 Mbp
40 443 1.52 Mbp 443 1.52 Mbp
50 655 1.25 Mbp 655 1.25 Mbp
60 920 0.97 Mbp 920 0.97 Mbp
70 1281 0.68 Mbp 1281 0.68 Mbp
80 1820 415.16 Kbp 1820 415.16 Kbp
90 3029 122.02 Kbp 3029 122.02 Kbp
100 0 0
0.979x 8892 2.86 Gbp 8892 2.86 Gbp
NG based on genome size 2.92 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 19 December 2023
mMunRee1.MT.20231219.fasta.gz (5.2 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.