Molossus alvarezi

Alvarez's mastiff bat

Included in the VGP and BAT1K.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: mMolAlv
  name: Molossus alvarezi
  taxon_id: 1552295
  common_name: Alvarez's mastiff bat
  order:
    name: Chiroptera
  family:
    name: Molossidae
  individuals:
  - mMolAlv2
  genome_size: 2508570000
  genome_size_method: GoaT
  project: [ vgp , bat1k ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.fq) mMolAlv2 129.06 Gbp 51.45x 92.0 GiB
Arima mMolAlv2 142.51 Gbp 56.81x 80.5 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.51 Gbp.
Last upload on 28 February 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mMolAlv2 PacBio HiFi (.fq) 129.06 Gbp 51.45x 92.0 GiB
Arima 142.51 Gbp 56.81x 80.5 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.51 Gbp.
Last upload on 28 February 2024.
Assemblies
Individual 2 Haplotype 1 Assembly
Version assembly_curated from 4 March 2024
mMolAlv2.hap1.cur.20240304.fasta.gz (647.9 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 113.75 Mbp 1 278.82 Mbp
20 5 87.25 Mbp 3 134.31 Mbp
30 8 82.56 Mbp 5 120.29 Mbp
40 11 74.78 Mbp 7 119.84 Mbp
50 15 63.41 Mbp 9 112.65 Mbp
60 19 53.31 Mbp 11 110.21 Mbp
70 24 38.38 Mbp 14 99.05 Mbp
80 32 28.98 Mbp 17 74.92 Mbp
90 44 15.21 Mbp 20 61.11 Mbp
100 405 6.21 Kbp 325 6.21 Kbp
1.000x 405 2.48 Gbp 325 2.48 Gbp
NG based on genome size 2.51 Gbp.
Individual 2 Haplotype 2 Assembly
Version assembly_curated from 4 March 2024
mMolAlv2.hap2.cur.20240304.fasta.gz (651.8 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 3 117.16 Mbp 1 276.55 Mbp
20 5 105.54 Mbp 3 134.77 Mbp
30 7 101.85 Mbp 5 120.59 Mbp
40 10 91.63 Mbp 7 117.16 Mbp
50 13 69.28 Mbp 9 113.33 Mbp
60 17 59.55 Mbp 11 109.46 Mbp
70 23 30.89 Mbp 14 98.77 Mbp
80 32 25.09 Mbp 17 76.38 Mbp
90 45 12.09 Mbp 21 57.80 Mbp
100 362 5.76 Kbp 287 5.76 Kbp
1.000x 362 2.50 Gbp 287 2.50 Gbp
NG based on genome size 2.51 Gbp.
Individual 2 Mitochondrial Assembly
Version assembly_MT_rockefeller from 13 September 2023
mMolAlv2.MT.20230913.fasta.gz (5.3 KiB)

Quality: not computed
Assembly Metadata
assembly_vgp_HiC_2.0/mMolAlv2_hap1.yml (view)
species: Molossus alvarezi
specimen: mMolAlv2
projects: 
  - vgp
assembled_by_group: Rockefeller
data_location: S3
release_to: S3
haplotype_to_curate: hap1
hap1: s3://genomeark/species/Molossus_alvarezi/mMolAlv2/assembly_vgp_HiC_2.0/mMolAlv2.HiC.hap1.20230905.fasta.gz
hap2: s3://genomeark/species/Molossus_alvarezi/mMolAlv2/assembly_vgp_HiC_2.0/mMolAlv2.HiC.hap2.20230905.fasta.gz
pretext_hap1: s3://genomeark/species/Molossus_alvarezi/mMolAlv2/assembly_vgp_HiC_2.0/evaluation/hap1/pretext/mMolAlv2_hap1_s2.pretext
pretext_hap2: s3://genomeark/species/Molossus_alvarezi/mMolAlv2/assembly_vgp_HiC_2.0/evaluation/hap2/pretext/mMolAlv2_hap2_s2.pretext
kmer_spectra_img: s3://genomeark/species/Molossus_alvarezi/mMolAlv2/assembly_vgp_HiC_2.0/evaluation/merqury/mMolAlv2_png/
pacbio_read_dir: s3://genomeark/species/Molossus_alvarezi/mMolAlv2/genomic_data/pacbio_hifi/
pacbio_read_type: hifi
hic_read_dir: s3://genomeark/species/Molossus_alvarezi/mMolAlv2/genomic_data/arima/
mito: s3://genomeark/species/Molossus_alvarezi/mMolAlv2/assembly_MT_rockefeller/mMolAlv2.MT.20230913.fasta.gz
pipeline: 
  - hifiasm (0.19.3+galaxy0)
  - yahs (1.2a.2+galaxy1)
notes: This was a Hifiasm-HiC assembly of mMolAlv2, resulting in two complete haplotypes. HiC scaffolding was performed with YaHS.  The HiC prep kit used was Swift-IDT. 
assembly_vgp_HiC_2.0/mMolAlv2_hap2.yml (view)
species: Molossus alvarezi
specimen: mMolAlv2
projects: 
  - vgp
assembled_by_group: Rockefeller
data_location: S3
release_to: S3
haplotype_to_curate: hap2
hap1: s3://genomeark/species/Molossus_alvarezi/mMolAlv2/assembly_vgp_HiC_2.0/mMolAlv2.HiC.hap1.20230905.fasta.gz
hap2: s3://genomeark/species/Molossus_alvarezi/mMolAlv2/assembly_vgp_HiC_2.0/mMolAlv2.HiC.hap2.20230905.fasta.gz
pretext_hap1: s3://genomeark/species/Molossus_alvarezi/mMolAlv2/assembly_vgp_HiC_2.0/evaluation/hap1/pretext/mMolAlv2_hap1_s2.pretext
pretext_hap2: s3://genomeark/species/Molossus_alvarezi/mMolAlv2/assembly_vgp_HiC_2.0/evaluation/hap2/pretext/mMolAlv2_hap2_s2.pretext
kmer_spectra_img: s3://genomeark/species/Molossus_alvarezi/mMolAlv2/assembly_vgp_HiC_2.0/evaluation/merqury/mMolAlv2_png/
pacbio_read_dir: s3://genomeark/species/Molossus_alvarezi/mMolAlv2/genomic_data/pacbio_hifi/
pacbio_read_type: hifi
hic_read_dir: s3://genomeark/species/Molossus_alvarezi/mMolAlv2/genomic_data/arima/
mito: s3://genomeark/species/Molossus_alvarezi/mMolAlv2/assembly_MT_rockefeller/mMolAlv2.MT.20230913.fasta.gz
pipeline: 
  - hifiasm (0.19.3+galaxy0)
  - yahs (1.2a.2+galaxy1)
notes: This was a Hifiasm-HiC assembly of mMolAlv2, resulting in two complete haplotypes. HiC scaffolding was performed with YaHS.  The HiC prep kit used was Swift-IDT. 
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.