Micronycteris microtis

common big-eared bat

Included in the VGP and BAT1K.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: mMicMic
  name: Micronycteris microtis
  taxon_id: 249008
  common_name: common big-eared bat
  order:
    name: Chiroptera
  family:
    name: Phyllostomidae
  individuals:
  - mMicMic1
  genome_size: 2229840000
  genome_size_method: GoaT
  project: [ vgp , bat1k ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.fq) mMicMic1 80.66 Gbp 36.17x 60.8 GiB
Arima mMicMic1 130.72 Gbp 58.62x 69.8 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.23 Gbp.
Last upload on 27 October 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mMicMic1 PacBio HiFi (.fq) 80.66 Gbp 36.17x 60.8 GiB
Arima 130.72 Gbp 58.62x 69.8 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.23 Gbp.
Last upload on 27 October 2023.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_curated from 7 November 2023
mMicMic1.hap1.decontam.20231107.fasta.gz (586.0 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 1 225.10 Mbp 1 241.78 Mbp
20 3 119.89 Mbp 2 238.03 Mbp
30 5 91.07 Mbp 3 220.70 Mbp
40 8 78.14 Mbp 4 190.54 Mbp
50 11 59.31 Mbp 6 134.00 Mbp
60 15 45.28 Mbp 7 125.64 Mbp
70 20 38.19 Mbp 9 97.10 Mbp
80 27 26.42 Mbp 12 56.98 Mbp
90 36 18.38 Mbp 16 45.79 Mbp
100 247 12.37 Kbp 193 12.37 Kbp
1.000x 247 2.15 Gbp 193 2.15 Gbp
NG based on genome size 2.23 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_curated from 7 November 2023
mMicMic1.hap2.decontam.20231107.fasta.gz (554.9 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 140.25 Mbp 1 243.89 Mbp
20 3 122.40 Mbp 2 237.95 Mbp
30 5 85.88 Mbp 3 220.72 Mbp
40 8 70.08 Mbp 4 190.06 Mbp
50 11 58.59 Mbp 5 145.96 Mbp
60 15 45.47 Mbp 7 125.43 Mbp
70 20 38.19 Mbp 9 93.76 Mbp
80 26 26.25 Mbp 11 57.00 Mbp
90 35 18.15 Mbp 15 45.79 Mbp
100 227 15.59 Kbp 176 15.59 Kbp
1.000x 227 2.04 Gbp 176 2.04 Gbp
NG based on genome size 2.23 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 3 November 2023
mMicMic1.MT.20231103.fasta.gz (16.4 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.