Micromys minutus

European harvest mouse

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: mMicMin
  name: Micromys minutus
  taxon_id: 13151
  common_name: European harvest mouse
  order:
    name: Rodentia
  family:
    name: Muridae
  individuals:
    - short_name: mMicMin1
      biosample_id: SAMEA112468042
      sex: female
  genome_size: 3110040000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) mMicMin1 96.23 Gbp 30.94x 37.4 GiB
Arima mMicMin1 424.48 Gbp 136.49x 129.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.11 Gbp.
Last upload on 19 December 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mMicMin1 PacBio HiFi (.bam) 96.23 Gbp 30.94x 37.4 GiB
Arima 424.48 Gbp 136.49x 129.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.11 Gbp.
Last upload on 19 December 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 26 January 2024
mMicMin1.pri.cur.20240126.fasta.gz (705.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 52 4.19 Mbp 2 128.38 Mbp
20 140 3.03 Mbp 5 90.24 Mbp
30 256 2.41 Mbp 8 75.80 Mbp
40 399 1.94 Mbp 13 61.79 Mbp
50 581 1.50 Mbp 18 54.52 Mbp
60 824 1.10 Mbp 24 50.63 Mbp
70 1167 0.74 Mbp 32 30.99 Mbp
80 1760 349.81 Kbp 122 0.92 Mbp
90 0 0
100 0 0
0.853x 2914 2.65 Gbp 894 2.65 Gbp
NG based on genome size 3.11 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 26 January 2024
mMicMin1.alt.cur.20240126.fasta.gz (108.0 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 389 247.93 Kbp 389 247.93 Kbp
20 0 0
30 0 0
40 0 0
50 0 0
60 0 0
70 0 0
80 0 0
90 0 0
100 0 0
0.153x 5020 476.36 Mbp 5020 476.36 Mbp
NG based on genome size 3.11 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 22 December 2023
mMicMin1.MT.20231222.fasta.gz (5.1 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.