Microchirus variegatus

thickback sole

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: fMicVar
  name: Microchirus variegatus
  taxon_id: 90074
  common_name: thickback sole
  order:
    name: Pleuronectiformes
  family:
    name: Soleidae
  individuals:
    - short_name: fMicVar1
      biosample_id: SAMEA12219470
      sex: female
  genome_size: 713940000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) fMicVar1 25.53 Gbp 35.76x 87.2 GiB
Arima fMicVar1 258.84 Gbp 362.56x 76.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.71 Gbp.
Last upload on 13 June 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fMicVar1 PacBio HiFi (.bam) 25.53 Gbp 35.76x 87.2 GiB
Arima 258.84 Gbp 362.56x 76.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.71 Gbp.
Last upload on 13 June 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 14 September 2023
fMicVar1.pri.cur.20230914.fasta.gz (194.2 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 10 6.76 Mbp 2 45.35 Mbp
20 23 4.80 Mbp 4 38.82 Mbp
30 40 3.58 Mbp 6 34.15 Mbp
40 62 2.92 Mbp 8 32.62 Mbp
50 88 2.49 Mbp 10 29.84 Mbp
60 120 2.01 Mbp 13 28.49 Mbp
70 160 1.61 Mbp 15 27.32 Mbp
80 210 1.18 Mbp 18 24.70 Mbp
90 287 0.74 Mbp 21 20.65 Mbp
100 458 170.37 Kbp 44 437.69 Kbp
1.015x 642 0.72 Gbp 188 0.72 Gbp
NG based on genome size 0.71 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 14 September 2023
fMicVar1.alt.cur.20230914.fasta.gz (190.7 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 28 1.95 Mbp 28 1.95 Mbp
20 69 1.47 Mbp 69 1.47 Mbp
30 125 1.15 Mbp 125 1.15 Mbp
40 195 0.92 Mbp 195 0.92 Mbp
50 281 0.76 Mbp 281 0.76 Mbp
60 385 0.60 Mbp 385 0.60 Mbp
70 523 435.64 Kbp 523 435.64 Kbp
80 720 294.79 Kbp 720 294.79 Kbp
90 1060 139.45 Kbp 1060 139.45 Kbp
100 0 0
0.977x 2058 0.70 Gbp 2058 0.70 Gbp
NG based on genome size 0.71 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 1 July 2023
fMicVar1.MT.20230701.fasta.gz (5.5 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.