Merops nubicus

carmine bee-eater

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank bMerNub1: GCA_009819595.1 bMerNub1: GCA_009819585.1
ENA bMerNub1: GCA_009819595.1 bMerNub1: GCA_009819585.1
UCSC Genome Browser bMerNub1: GCA_009819595.1 bMerNub1: GCA_009819585.1

metadata.yaml (view) (edit on github)
species:
  common_name: carmine bee-eater
  family:
    name: Meropidae
  genome_size: 1300000000
  genome_size_method: null
  individuals:
  - short_name: bMerNub1
  name: Merops nubicus
  order:
    name: Coraciiformes
  short_name: bMerNub
  taxon_id: 57421
  project: [ vgp ]
CC BY-SA 3.0 Luc Viatour (wikimedia)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR bMerNub1 78.21 Gbp 60.16x 134.0 GiB
10x bMerNub1 130.10 Gbp 100.07x 66.3 GiB
Bionano bMerNub1 N/A 337.94x 734.2 MiB
Arima bMerNub1 142.86 Gbp 109.89x 76.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.30 Gbp.
Last upload on 14 September 2019.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bMerNub1 PacBio CLR 78.21 Gbp 60.16x 134.0 GiB
10x 130.10 Gbp 100.07x 66.3 GiB
Bionano N/A 337.94x 734.2 MiB
Arima 142.86 Gbp 109.89x 76.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.30 Gbp.
Last upload on 14 September 2019.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 15 August 2019
bMerNub1.pri.cur.20190815.fasta.gz (333.7 MiB)

Quality: 299.9 errors/Mb (QV=35.23)

Contigs Scaffolds
NG LG Len LG Len
10 3 31.89 Mbp 1 80.19 Mbp
20 8 25.81 Mbp 3 71.73 Mbp
30 13 20.62 Mbp 5 63.10 Mbp
40 21 13.87 Mbp 7 50.89 Mbp
50 32 11.28 Mbp 10 47.94 Mbp
60 46 7.95 Mbp 12 43.61 Mbp
70 71 3.77 Mbp 16 37.60 Mbp
80 121 1.71 Mbp 21 17.19 Mbp
90 0 0
100 0 0
0.879x 377 1.14 Gbp 108 1.15 Gbp
NG based on genome size 1.30 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 15 August 2019
bMerNub1.alt.cur.20190815.fasta.gz (331.6 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 15 6.08 Mbp 15 6.08 Mbp
20 43 3.79 Mbp 43 3.79 Mbp
30 83 2.92 Mbp 83 2.92 Mbp
40 135 2.13 Mbp 135 2.13 Mbp
50 206 1.58 Mbp 206 1.58 Mbp
60 311 0.96 Mbp 311 0.96 Mbp
70 496 485.29 Kbp 496 485.29 Kbp
80 1276 75.82 Kbp 1276 75.82 Kbp
90 0 0
100 0 0
0.863x 3296 1.12 Gbp 3296 1.12 Gbp
NG based on genome size 1.30 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 18 September 2019
bMerNub1.MT.20190918.fasta.gz (5.2 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.