Melopsittacus undulatus

budgerigar

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Maternal Assembly Paternal Assembly
GenBank bMelUnd1: GCA_012275265.1 bMelUnd1: GCA_012275275.1
ENA bMelUnd1: GCA_012275265.1 bMelUnd1: GCA_012275275.1
UCSC Genome Browser bMelUnd1: GCA_012275265.1 bMelUnd1: GCA_012275275.1

metadata.yaml (view) (edit on github)
species:
  common_name: budgerigar
  family:
    name: Psittaculidae
  genome_size: 1230000000
  genome_size_method: null
  individuals:
  - short_name: bMelUnd1
  name: Melopsittacus undulatus
  order:
    name: Psittaciformes
  short_name: bMelUnd
  taxon_id: 13146
  project: [ vgp ]
CC BY-SA 3.0 Atlanta Zoo (wikimedia)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR bMelUnd1 75.02 Gbp 60.99x 129.9 GiB
10x bMelUnd1 98.91 Gbp 80.41x 50.5 GiB
Bionano bMelUnd1 N/A 402.68x 1.0 GiB
Arima bMelUnd1 100.51 Gbp 81.72x 53.2 GiB
Illumina bMelUnd2 199.74 Gbp 162.39x 98.6 GiB
bMelUnd3 188.39 Gbp 153.16x 92.6 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.23 Gbp.
Last upload on 30 August 2019.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bMelUnd1 PacBio CLR 75.02 Gbp 60.99x 129.9 GiB
10x 98.91 Gbp 80.41x 50.5 GiB
Bionano N/A 402.68x 1.0 GiB
Arima 100.51 Gbp 81.72x 53.2 GiB
bMelUnd2 Illumina 199.74 Gbp 162.39x 98.6 GiB
bMelUnd3 Illumina 188.39 Gbp 153.16x 92.6 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.23 Gbp.
Last upload on 30 August 2019.
Assemblies
Individual 1 Merged Trio Assembly
Version assembly_curated from 4 February 2020
bMelUnd1.mat.Z.cur.20200204.fasta.gz (335.5 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 46.70 Mbp 0 155.07 Mbp
20 5 37.80 Mbp 1 121.02 Mbp
30 8 36.32 Mbp 2 118.16 Mbp
40 13 21.98 Mbp 3 112.75 Mbp
50 20 15.86 Mbp 5 87.08 Mbp
60 30 9.30 Mbp 6 86.48 Mbp
70 45 6.55 Mbp 8 57.50 Mbp
80 74 2.79 Mbp 10 35.28 Mbp
90 179 350.52 Kbp 25 2.06 Mbp
100 0 0
0.950x 1148 1.17 Gbp 864 1.17 Gbp
NG based on genome size 1.23 Gbp.
Individual 1 Maternal Assembly
Version assembly_curated from 30 August 2019
bMelUnd1.mat.decon.20190830.fasta.gz (317.3 MiB)

Quality: 107.6 errors/Mb (QV=39.68)

Contigs Scaffolds
NG LG Len LG Len
10 2 46.70 Mbp 1 113.31 Mbp
20 5 37.80 Mbp 2 88.75 Mbp
30 8 36.32 Mbp 3 87.39 Mbp
40 13 17.90 Mbp 4 86.63 Mbp
50 21 12.55 Mbp 6 75.85 Mbp
60 34 7.39 Mbp 8 57.50 Mbp
70 57 4.05 Mbp 11 35.30 Mbp
80 112 1.11 Mbp 16 16.16 Mbp
90 0 46 0.97 Mbp
100 0 0
0.896x 1318 1.10 Gbp 930 1.17 Gbp
NG based on genome size 1.23 Gbp.
Individual 1 Paternal Assembly
Version assembly_curated from 30 August 2019
bMelUnd1.pat.decon.20190830.fasta.gz (323.8 MiB)

Quality: 125.1 errors/Mb (QV=39.03)

Contigs Scaffolds
NG LG Len LG Len
10 2 41.87 Mbp 0 241.60 Mbp
20 6 25.46 Mbp 1 116.19 Mbp
30 11 21.98 Mbp 2 112.71 Mbp
40 18 14.91 Mbp 3 99.20 Mbp
50 28 9.58 Mbp 4 87.11 Mbp
60 46 4.97 Mbp 5 86.53 Mbp
70 85 1.98 Mbp 8 45.27 Mbp
80 204 0.58 Mbp 11 23.07 Mbp
90 865 51.90 Kbp 53 331.85 Kbp
100 0 0
0.905x 1067 1.11 Gbp 330 1.12 Gbp
NG based on genome size 1.23 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 20 August 2019
bMelUnd1.MT.20190820.fasta.gz (5.1 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.