Melanotaenia boesemani

Boeseman's rainbowfish

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank fMelBoe1: GCA_017639745.1 fMelBoe1: GCA_017639755.1
ENA fMelBoe1: GCA_017639745.1 fMelBoe1: GCA_017639755.1
UCSC Genome Browser fMelBoe1: GCA_017639745.1 fMelBoe1: GCA_017639755.1

metadata.yaml (view) (edit on github)
species:
  short_name: fMelBoe
  name: Melanotaenia boesemani
  taxon_id: 1250792
  common_name: Boeseman's rainbowfish
  order:
    name: Atheriniformes
  family:
    name: Melanotaeniidae
  individuals:
    - short_name: fMelBoe1
  project: [ vgp ]
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR fMelBoe1 61.93 Gbp 71.54x 107.4 GiB
10x fMelBoe1 120.92 Gbp 139.70x 59.2 GiB
Bionano fMelBoe1 N/A 943.51x 1.5 GiB
Arima fMelBoe1 107.28 Gbp 123.94x 52.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.87 Gbp.
Last upload on 26 October 2020.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fMelBoe1 PacBio CLR 61.93 Gbp 71.54x 107.4 GiB
10x 120.92 Gbp 139.70x 59.2 GiB
Bionano N/A 943.51x 1.5 GiB
Arima 107.28 Gbp 123.94x 52.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.87 Gbp.
Last upload on 26 October 2020.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 12 March 2021
fMelBoe1.pri.cur.20210312.fasta.gz (248.2 MiB)

Quality: 64.7 errors/Mb (QV=41.89)

Contigs Scaffolds
NG LG Len LG Len
10 3 22.44 Mbp 2 41.08 Mbp
20 7 18.58 Mbp 4 39.49 Mbp
30 13 14.01 Mbp 6 39.29 Mbp
40 19 12.20 Mbp 8 38.00 Mbp
50 27 9.30 Mbp 10 37.88 Mbp
60 40 5.51 Mbp 13 35.46 Mbp
70 59 3.87 Mbp 15 34.71 Mbp
80 88 2.36 Mbp 18 31.82 Mbp
90 140 1.13 Mbp 20 30.54 Mbp
100 531 165 bp 91 874 bp
1.000x 532 0.86 Gbp 92 0.87 Gbp
NG based on genome size 0.87 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 12 March 2021
fMelBoe1.alt.cur.20210312.fasta.gz (221.0 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 46 1.28 Mbp 45 1.31 Mbp
20 117 0.91 Mbp 115 0.93 Mbp
30 212 0.71 Mbp 209 0.72 Mbp
40 334 0.55 Mbp 331 0.55 Mbp
50 496 411.98 Kbp 492 412.53 Kbp
60 712 307.95 Kbp 708 309.46 Kbp
70 1000 230.82 Kbp 994 232.70 Kbp
80 1395 163.85 Kbp 1387 164.84 Kbp
90 1966 108.35 Kbp 1952 109.30 Kbp
100 3238 420 bp 3193 485 bp
1.000x 3239 0.76 Gbp 3194 0.76 Gbp
NG based on genome size 0.87 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 2 October 2019
fMelBoe1.MT.20191002.fasta.gz (5.2 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.